Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_B10
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    29   0.68 
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   2.1  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   2.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   3.6  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    25   6.3  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   8.4  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   8.4  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   8.4  
SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate |Schizosacc...    25   8.4  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 361  VAPFACRRTVRPSLATPSRGSPCSVSLGHPRTVSFC 468
            V+PF   R + P  A P R  P  + +GH   V++C
Sbjct: 1236 VSPFK-ERLLSPIFAKPLRALPFHIQIGHIDAVNYC 1270


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 394 PSLATPSRGSPCSVSLGHPRTVSFCRRRIVCRHASR 501
           PS+++    S  S+SL +   +SFC+ +  CR+  R
Sbjct: 328 PSVSSSLSSSVASLSLQNSNILSFCKDQHGCRYLQR 363


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -2

Query: 577  KALKKGLDPEALTGKHPPKI---QVASKYERRVDTRSYDDKKKLFEGDLE-KLNKDFLEK 410
            KALKK    + +  K+PP      V+ K++R VD  +  +  KL     E KL+   L +
Sbjct: 1113 KALKKPYKYDPVLDKYPPSRYLGSVSEKFQRAVDEYTQKNPDKLIASKKESKLDDSLLNE 1172


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 382  RTVRPSLATPSRGSPCSVSLGHPRTVSFCRRR 477
            R + P    P R  P ++ +GH   +++C  R
Sbjct: 1294 RLLSPIFGKPLRALPFTIQIGHIDAITYCLHR 1325


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 478 SYDDKKKLFEGDLEKLNKDFLEK 410
           S  DKKK+    +EK++KD L K
Sbjct: 120 SLKDKKKMIVSGIEKVHKDKLSK 142


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 373 QKARLPKWFGERP 335
           QK RLP+W G+ P
Sbjct: 84  QKDRLPRWIGDNP 96


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 93  SYSFVTNPLTYCYYNMNKI 37
           SY+ V    +YCY+++NK+
Sbjct: 183 SYNVVNGWYSYCYHSLNKL 201


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 445 DLEKLNKDFLEKVWQERAEQFGGRQKAR 362
           DLEKL+ +F EKV +E  E +   +K R
Sbjct: 300 DLEKLHSNFAEKV-KEEQELYKSLEKKR 326


>SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 211

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 499 ERRVDTRSYDDKKKLFEGDLEKLNKDFLEKVW 404
           E  ++T   +   + + GDL+ LNKD   K W
Sbjct: 80  EPNLETIKSEKLNERYYGDLQGLNKDDARKKW 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,291
Number of Sequences: 5004
Number of extensions: 23639
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)