Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_B10
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T prot...    67   8e-12
U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle position...    67   8e-12
U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t pro...    65   4e-11
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    65   4e-11
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot...    52   4e-07
AF039039-5|AAB94176.2|  347|Caenorhabditis elegans Troponin t pr...    46   2e-05
AF039039-6|AAO25996.1|  308|Caenorhabditis elegans Troponin t pr...    46   3e-05
U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z48716-1|CAA88601.1|  482|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z70270-3|CAA94227.1|  153|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditi...    27   7.7  

>U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T
           protein.
          Length = 405

 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 36/80 (45%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
 Frame = -2

Query: 595 KQQLRHKALKKGLDPE-ALTGKHPPKIQVASKYERRVDTRSYDDKKKLFEGDLEKLNKDF 419
           +Q  R+KALKKGLDPE A +  HPPKI  ASK++R+ D RSY D++ LFE   E+     
Sbjct: 272 RQAARNKALKKGLDPEEAASSVHPPKITTASKFDRQTDRRSYGDRRYLFENPEEEKQASL 331

Query: 418 LEKVWQERAEQFGGRQKARL 359
           +    +  AE +G +Q   L
Sbjct: 332 VRGTGRPPAE-WGRKQNEEL 350


>U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle positioning
           protein 2 protein.
          Length = 405

 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 36/80 (45%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
 Frame = -2

Query: 595 KQQLRHKALKKGLDPE-ALTGKHPPKIQVASKYERRVDTRSYDDKKKLFEGDLEKLNKDF 419
           +Q  R+KALKKGLDPE A +  HPPKI  ASK++R+ D RSY D++ LFE   E+     
Sbjct: 272 RQAARNKALKKGLDPEEAASSVHPPKITTASKFDRQTDRRSYGDRRYLFENPEEEKQASL 331

Query: 418 LEKVWQERAEQFGGRQKARL 359
           +    +  AE +G +Q   L
Sbjct: 332 VRGTGRPPAE-WGRKQNEEL 350


>U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t
           protein 2, isoform b protein.
          Length = 324

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 31/55 (56%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
 Frame = -2

Query: 595 KQQLRHKALKKGLDPE-ALTGKHPPKIQVASKYERRVDTRSYDDKKKLFEGDLEK 434
           +Q  R+KALKKGLDPE A +  HPPKI  ASK++R+ D RSY D++ LFE    K
Sbjct: 177 RQVARNKALKKGLDPEEAASSVHPPKITTASKFDRQTDRRSYGDRRYLFENPFVK 231


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 31/55 (56%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
 Frame = -2

Query: 595 KQQLRHKALKKGLDPE-ALTGKHPPKIQVASKYERRVDTRSYDDKKKLFEGDLEK 434
           +Q  R+KALKKGLDPE A +  HPPKI  ASK++R+ D RSY D++ LFE    K
Sbjct: 281 RQVARNKALKKGLDPEEAASSVHPPKITTASKFDRQTDRRSYGDRRYLFENPFVK 335


>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
            3, isoform b protein.
          Length = 1178

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 21/50 (42%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
 Frame = -2

Query: 595  KQQLRHKALKKGLDP-EALTGKHPPKIQVASKYERRVDTRSYDDKKKLFE 449
            +Q  R+ ALKKG+DP E    ++P K+Q+ SKY+R+VD R++ +++ +F+
Sbjct: 1092 RQVTRNSALKKGIDPAEVGNTRYPAKVQIVSKYDRQVDRRNFRERRSVFD 1141


>AF039039-5|AAB94176.2|  347|Caenorhabditis elegans Troponin t
           protein 4, isoform a protein.
          Length = 347

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 13/33 (39%), Positives = 29/33 (87%)
 Frame = -2

Query: 538 GKHPPKIQVASKYERRVDTRSYDDKKKLFEGDL 440
           G+HPPK+Q++SKY+R++D R++ ++++++E  +
Sbjct: 276 GRHPPKVQISSKYDRQIDRRNFKERRQVYENKI 308


>AF039039-6|AAO25996.1|  308|Caenorhabditis elegans Troponin t
           protein 4, isoform b protein.
          Length = 308

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 13/30 (43%), Positives = 28/30 (93%)
 Frame = -2

Query: 538 GKHPPKIQVASKYERRVDTRSYDDKKKLFE 449
           G+HPPK+Q++SKY+R++D R++ ++++++E
Sbjct: 276 GRHPPKVQISSKYDRQIDRRNFKERRQVYE 305


>U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical
           protein R08C7.5 protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
 Frame = -2

Query: 541 TGKHPPKIQVASKYERRVDTRSYDDKKKL-----FEGDLEKLNKDFLEKVWQERAEQFGG 377
           T  H PK       E   D+    DK K      +  D+  +N+++ + +       FG 
Sbjct: 406 TRVHKPKSATDYGVESESDSDFERDKSKQKNFPKWASDMNIVNEEYAKNLEFNVNTFFGS 465

Query: 376 RQKARLPKWFGERPGKKK 323
            +KA L + FGE   KKK
Sbjct: 466 MEKANLTEIFGEMVRKKK 483


>Z48716-1|CAA88601.1|  482|Caenorhabditis elegans Hypothetical
           protein F59B10.2 protein.
          Length = 482

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = -1

Query: 578 QSSQEGSRPRSAHRQAP-AQNSSSVQVREACRHTILRRQKE 459
           +SS++  +PR   R+AP + +SSS  +R+A R   + R++E
Sbjct: 360 KSSEKMEKPRKDIRRAPRSSSSSSSTLRDAEREQDIERRRE 400


>Z70270-3|CAA94227.1|  153|Caenorhabditis elegans Hypothetical
           protein C53D6.5 protein.
          Length = 153

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 493 RVDTRSYDDKKKLFEGDLEKLNKDFLEKVWQER 395
           R  T   + ++KL +  L+K   D L+K WQER
Sbjct: 85  RQRTEKLEIEQKLKDPKLDKATSDELKKQWQER 117


>AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditis
           gtp-binding proteinprotein 1 protein.
          Length = 613

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 415 EKVWQERAEQFGGRQKARLPKWFGERP--GKKKGELE 311
           E + Q+RA+Q  GRQK    K  G +P  GK K ++E
Sbjct: 555 ESLAQQRAKQKDGRQKQYGKKSMGPKPPNGKPKEKIE 591


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,931,471
Number of Sequences: 27780
Number of extensions: 136749
Number of successful extensions: 582
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)