Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_B08
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1486 + 30470838-30472460 33 0.053
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112 27 3.5
01_01_0589 + 4394154-4394513,4394641-4394762,4394862-4395057,439... 27 3.5
11_01_0596 + 4755453-4755490,4755675-4756047,4757739-4758940,475... 27 4.6
04_03_0894 - 20619037-20620392 27 6.1
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580... 27 6.1
12_01_0772 - 7016864-7017012,7017114-7017262,7017346-7017489,701... 26 8.1
08_02_1362 + 26406710-26408530 26 8.1
05_06_0088 - 25453249-25453282,25453369-25453461,25454111-254541... 26 8.1
03_02_0464 - 8683232-8684596 26 8.1
>06_03_1486 + 30470838-30472460
Length = 540
Score = 33.5 bits (73), Expect = 0.053
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -2
Query: 305 ATAVAYLAECGFEEAAGASARVLGAMLNRPEEEVRALLQEPA 180
ATA+A+ A C F+ AA + AR LG + + + EPA
Sbjct: 81 ATAIAHNATCAFQGAASSPARALGRLPSSGRHAYTCAMPEPA 122
>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
Length = 1372
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -2
Query: 323 GKLEIAATAVAYLAECGFEEAAGASARVLGAMLNRPEEE 207
GK+ AA A+ ++ ECGF+ + + +L A++ + E
Sbjct: 174 GKVLDAAAAIFFMDECGFKASLFSCNNILNALVGINKSE 212
>01_01_0589 +
4394154-4394513,4394641-4394762,4394862-4395057,
4395275-4395392,4395499-4395546,4395691-4395791,
4395893-4396000
Length = 350
Score = 27.5 bits (58), Expect = 3.5
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 233 AMLNRPEEEVRALLQEPAGAL-AGSLHPAALAV 138
A +R EE R +L AG L G + PAALAV
Sbjct: 5 ASFDRVPEEARRILHRLAGELWGGDVDPAALAV 37
>11_01_0596 +
4755453-4755490,4755675-4756047,4757739-4758940,
4759026-4759392
Length = 659
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 263 AAGASARVLGAMLNRPEEEVRALLQEPAGALA 168
AAG A V M + +E +R L+QE AG A
Sbjct: 252 AAGVVATVTARMADTNQESLRQLIQEHAGEAA 283
>04_03_0894 - 20619037-20620392
Length = 451
Score = 26.6 bits (56), Expect = 6.1
Identities = 26/83 (31%), Positives = 40/83 (48%)
Frame = -2
Query: 362 EXISTLAEKAASIGKLEIAATAVAYLAECGFEEAAGASARVLGAMLNRPEEEVRALLQEP 183
E +AE + ++ A+ AV +L E A+ A V A +PEE + +P
Sbjct: 131 ELADIVAESDRNRRCVQGASGAVEFLLSVVKERASVAG--VDDATSAKPEETTCGGVHDP 188
Query: 182 AGALAGSLHPAALAVLHSYHLAK 114
A A S AAL++LHS L++
Sbjct: 189 AKA--SSPEEAALSILHSLKLSE 209
>03_05_0725 + 27155736-27155746,27155798-27155949,27156108-27158068,
27159169-27159397,27159506-27159634,27159725-27159838,
27160059-27160258,27160301-27160599,27160713-27160923,
27161017-27161172,27161290-27161447,27161532-27161724,
27162015-27162406,27162537-27162717,27162802-27163031,
27163108-27163753,27163833-27163902,27163994-27164244
Length = 1860
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 229 IAPSTRALAPAASSNPHSAR*ATAVAAIS 315
IAPS + A +S+PH A+ A AA S
Sbjct: 1806 IAPSQQEAGVAVASSPHEAQKTAAAAAAS 1834
>12_01_0772 -
7016864-7017012,7017114-7017262,7017346-7017489,
7017549-7017719,7017907-7018020,7018115-7018215,
7018296-7018416,7018601-7018830,7019203-7019265,
7019528-7019570,7019860-7019953,7020428-7020501,
7020616-7020744,7020940-7021017,7021353-7021639
Length = 648
Score = 26.2 bits (55), Expect = 8.1
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2
Query: 236 GAMLNRPEEEVRALLQEPAGALAGSLHPAALAVLH 132
G + PEE AL E LA L PAAL LH
Sbjct: 56 GDTMITPEEVAEALPWELLHRLASLLPPAALEALH 90
>08_02_1362 + 26406710-26408530
Length = 606
Score = 26.2 bits (55), Expect = 8.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 266 EAAGASARVLGAMLNRPEEEVRALLQEPAGALA 168
E A +A + A + R EEEVRALL A L+
Sbjct: 98 ELASRAAETVQAAMPRLEEEVRALLGSSARRLS 130
>05_06_0088 -
25453249-25453282,25453369-25453461,25454111-25454199,
25454603-25454665,25454935-25455024,25455204-25455264,
25455499-25455593,25455861-25455950,25456136-25456222,
25456992-25457303
Length = 337
Score = 26.2 bits (55), Expect = 8.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 302 TAVAYLAECGFEEAAGASARVLGAMLNRPEEEVRALLQEPAGAL 171
TA +Y+A + A ARV+ + N PEE + L G L
Sbjct: 70 TAASYIAASYVKFVESAGARVVPLIYNEPEERLLEKLSLVNGVL 113
>03_02_0464 - 8683232-8684596
Length = 454
Score = 26.2 bits (55), Expect = 8.1
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 229 IAPSTRALAPAASSNPHSAR*ATAVAAISSFPIEAAFSAKVDI 357
++P + ++ PA S+PH+ + A SSF +F+A+ D+
Sbjct: 169 LSPQSLSITPAVPSSPHNRQIPQATTRQSSF---RSFAARGDV 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,313,061
Number of Sequences: 37544
Number of extensions: 46877
Number of successful extensions: 328
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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