Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_B07
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    28   0.86 
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    27   2.0  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   8.0  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    25   8.0  

>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 302 TALKGAIEVNNRHYDLTLKADGDT-HIVTSIGSRNHLTLRARSPVYEII 159
           T  +G ++ N RH D+ +K  G+T   +   GSR H     RS VY II
Sbjct: 29  TGPRGTLKQNLRHVDIEMKKQGNTIKFIVWHGSRKH-NACIRS-VYSII 75


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 231 SVAIRLQREVVMSIVNFYRTLQSCFATEI 317
           SVAI LQR  V S+   Y +L  CFA  +
Sbjct: 319 SVAISLQRIKVSSLCILYPSLACCFADSL 347


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 263 YDLTLKADGDTHIVTSIGSRNHLTLRAR-SPVYEIIKLREYFNVM 132
           YD+ LK  GD H V      ++LT+R++   ++ II L   F  +
Sbjct: 224 YDM-LKEAGDAHPVAGNAQGSYLTMRSQEGAIFFIINLAGNFGTV 267


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 269 RHYDLTLKADGDTHIVTSIGSR 204
           R++DL L    DTH + S+G R
Sbjct: 344 RNWDLALTCWKDTHAILSLGKR 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,160,349
Number of Sequences: 5004
Number of extensions: 42307
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)