Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_B07
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93381-1|CAB07604.1|  509|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81035-10|CAB02733.2|  405|Caenorhabditis elegans Hypothetical p...    28   5.5  
Z69902-4|CAA93763.1|  410|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z92809-1|CAB07270.1|  286|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z93381-1|CAB07604.1|  509|Caenorhabditis elegans Hypothetical
          protein F28G4.1 protein.
          Length = 509

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 79 YLNIVTVYLHKCFMLYYDLI*NF 11
          +LNI T++L   F+ YY LI NF
Sbjct: 3  FLNIATIFLITIFLFYYKLIYNF 25


>Z81035-10|CAB02733.2|  405|Caenorhabditis elegans Hypothetical
           protein C15H11.6 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 323 RNDIYPCGYNKPSTTVQKFVSTYFYTKKIADTQMPNNKLF*KYFSLNFKIVHT 481
           RN  Y  G ++  T V++F+ TY+     AD Q    +L   Y + N    HT
Sbjct: 203 RNGYY--GSDEVRTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHT 253


>Z69902-4|CAA93763.1|  410|Caenorhabditis elegans Hypothetical
           protein C47D12.5 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +3

Query: 330 IFTHADIINRLLPFKSL*AHIFIQRKSPTRRC-RI-----TNCFKNIF 455
           + TH  ++ RL P +S   H  + R S ++RC +I       CFK IF
Sbjct: 36  LMTHMILLLRLFPLRSQSFHFIVSRFSRSQRCWQIFVFLEMQCFKIIF 83


>Z92809-1|CAB07270.1|  286|Caenorhabditis elegans Hypothetical
           protein R17.1 protein.
          Length = 286

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +2

Query: 44  TFMQINSHNVQICTLNHNIYKLHIICLWNALH*NIHVILLFHRQVIELLVLSGY 205
           T   I S +VQ+ TL    +K+  I L   L    H++ +FH+Q +  L +S Y
Sbjct: 53  TMSTIISIDVQLNTLESLSFKVSEIGLRKFLD---HILDIFHQQKVSQLTISSY 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,807,798
Number of Sequences: 27780
Number of extensions: 232312
Number of successful extensions: 570
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)