Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_B05
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   0.70 
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    23   8.6  

>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 27.1 bits (57), Expect = 0.70
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -1

Query: 319 NYYVSSFSMMIGVFLFSFVFLYYKEDQPKTKSE*M--KC*FVCNVYLMLNILSQ*VM 155
           +Y +S  + +  +FL  F+ L  KED  K     +  +  F+ N Y +LN+L+  V+
Sbjct: 373 HYNLSDLADVQAIFLSRFILLRKKEDCKKLLEHVLPIRQLFLLNCYSLLNVLANYVV 429


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 193 VYLMLNILSQ*VMYIGHITF 134
           + LMLN+L     Y+G  TF
Sbjct: 502 IILMLNVLDSCTNYVGRYTF 521


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,067,862
Number of Sequences: 5004
Number of extensions: 15789
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)