Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_B05
         (325 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical pr...    40   4e-04
AF022971-5|AAG23972.2|  241|Caenorhabditis elegans Hypothetical ...    26   5.4  
U40956-1|AAA81756.1|  516|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical
           protein T09A5.11 protein.
          Length = 445

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = -1

Query: 316 YYVSSFSMMIGVFLFSFVFLYYKEDQPK 233
           YY SSFSMM G+ LFS V+LY+K+   K
Sbjct: 406 YYASSFSMMAGLVLFSIVYLYHKDTPVK 433


>AF022971-5|AAG23972.2|  241|Caenorhabditis elegans Hypothetical
           protein C31B8.9 protein.
          Length = 241

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 16  TFTSFVNRFHPGLSXXTKXFSFI*HHSILLSDLSIFKTN*M*YGRCTSLIDSRCLTLNTR 195
           + T F+  F P L+       +  H  I+   +S   TN M Y   TSL + +  TL+  
Sbjct: 53  SITKFIPPFVPLLNDYVVAEGYSLHGCIVRKSMSQLNTNIMCYLNNTSLYEQQNHTLSDT 112

Query: 196 YIQINTS 216
           +   NT+
Sbjct: 113 WEDRNTN 119


>U40956-1|AAA81756.1|  516|Caenorhabditis elegans Hypothetical
           protein ZK402.5 protein.
          Length = 516

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 86  YMKLKXFVXXESPGWNRLTKDVNVCTF 6
           ++KLK F+  +S G  ++ K + +C +
Sbjct: 20  FLKLKLFILIKSTGTVKIDKKMRICNY 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,892,223
Number of Sequences: 27780
Number of extensions: 86801
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)