Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_B03
(302 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 29 0.92
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 27 2.1
04_04_0584 + 26381220-26381232,26381583-26381594,26381921-263820... 27 2.1
04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278 27 2.1
01_07_0167 - 41613834-41613842,41614060-41615056,41615456-416163... 27 2.1
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 27 2.8
11_08_0024 + 27747449-27747940,27748141-27750177 27 2.8
11_08_0009 + 27600881-27602592,27602665-27603008,27603159-276038... 27 2.8
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973... 27 3.7
11_08_0026 + 27752519-27755441,27755538-27755923 26 4.9
02_05_0297 - 27662743-27662844,27663004-27663042 26 4.9
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 28.7 bits (61), Expect = 0.92
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 177 PGRPTAAVIMKKLGRISYHIILNSRIPSYTSVFVPSAGRIH 299
PG P + LG +S+ I+LN S T G++H
Sbjct: 85 PGVPLQGTLTPHLGNLSFLIVLNLANTSLTGTLPGDIGKLH 125
>07_01_0024 +
159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 209 KTRKNFVPHYSKFSY-PKLHKCFRSIG 286
+TRKNF+P YSK + P +H S G
Sbjct: 481 RTRKNFIPVYSKTDFCPFIHSTALSEG 507
>04_04_0584 +
26381220-26381232,26381583-26381594,26381921-26382028,
26382137-26382217,26382320-26382465,26382550-26382624,
26382709-26382756,26382845-26382994,26383081-26383140,
26383394-26384274,26384674-26385670,26385887-26385895
Length = 859
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 209 KTRKNFVPHYSKFSY-PKLHKCFRSIG 286
+TRKNF+P YSK + P +H S G
Sbjct: 555 RTRKNFIPVYSKTDFCPFIHSTALSEG 581
>04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278
Length = 368
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 209 KTRKNFVPHYSKFSY-PKLHKCFRSIG 286
+TRKNF+P YSK + P +H S G
Sbjct: 64 RTRKNFIPVYSKTDFCPFIHSTALSEG 90
>01_07_0167 -
41613834-41613842,41614060-41615056,41615456-41616336,
41616437-41616508,41616590-41616649,41616736-41616885,
41616974-41617021,41617107-41617181,41617266-41617411,
41617514-41617594,41617703-41617810,41618046-41618057,
41618137-41618148,41618499-41618546,41619021-41619105
Length = 927
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 209 KTRKNFVPHYSKFSY-PKLHKCFRSIG 286
+TRKNF+P YSK + P +H S G
Sbjct: 623 RTRKNFIPVYSKTDFCPFIHSTALSEG 649
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 177 PGRPTAAVIMKKLGRISYHIILNSRIPSYTSVFVPSAGRIH 299
PG P I LG +S+ +LN S T GR+H
Sbjct: 89 PGIPLQGSITPHLGNLSFLYVLNLANTSLTGTLPGVIGRLH 129
>11_08_0024 + 27747449-27747940,27748141-27750177
Length = 842
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 177 PGRPTAAVIMKKLGRISYHIILNSRIPSYTSVFVPSAGRIH 299
PG P + +G +S+ +LN I + T GR+H
Sbjct: 92 PGVPLQGKLSPHIGNLSFLSVLNLTITNLTGSIPDDIGRLH 132
>11_08_0009 +
27600881-27602592,27602665-27603008,27603159-27603806,
27603908-27604296
Length = 1030
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 177 PGRPTAAVIMKKLGRISYHIILNSRIPSYTSVFVPSAGRIH 299
PG P + +G +S+ +LN I + T GR+H
Sbjct: 92 PGVPLQGKLSPHIGNLSFLSVLNLTITNLTGSIPDDIGRLH 132
>11_06_0047 +
19595904-19596185,19596284-19596424,19597195-19597307,
19597970-19598049,19598557-19598720,19598931-19599060,
19599155-19599254,19599452-19599500,19599775-19599849,
19600026-19600124,19600745-19600823,19600897-19601045,
19601334-19601393,19601490-19601684
Length = 571
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 217 PSFFIITAAVGLPGWGLYHIHNLTLGNHYRRS 122
P+F ITAAVG+ WG + +L YR S
Sbjct: 305 PNFSRITAAVGIWSWGAISLAFASLVMFYRVS 336
>11_08_0026 + 27752519-27755441,27755538-27755923
Length = 1102
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 177 PGRPTAAVIMKKLGRISYHIILNSRIPSYTSVFVPSAGRIH 299
PG P + LG +S+ +LN S T GR+H
Sbjct: 86 PGIPLQGELSSHLGNLSFLSVLNLTNASLTGSVPEDIGRLH 126
>02_05_0297 - 27662743-27662844,27663004-27663042
Length = 46
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 300 NEFGRPMERKHLCNLGY 250
NE+G PM +H C GY
Sbjct: 24 NEYGYPMGTRHPCGCGY 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,332,436
Number of Sequences: 37544
Number of extensions: 118315
Number of successful extensions: 289
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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