Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_B03
         (302 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X81900-1|CAA57489.1|   70|Homo sapiens NADH oxidoreductase subun...    42   3e-04
U54993-1|AAD00084.1|   70|Homo sapiens mitochondrial complex I h...    42   3e-04
CR456889-1|CAG33170.1|   70|Homo sapiens ZNF183 protein.               42   3e-04
BC000266-1|AAH00266.1|   70|Homo sapiens NADH dehydrogenase (ubi...    42   3e-04
M77830-1|AAA85135.1| 2871|Homo sapiens desmoplakin I protein.          29   3.5  
AL031058-1|CAA19927.1| 2871|Homo sapiens desmoplakin protein.          29   3.5  
AB209992-1|BAE06074.1| 2319|Homo sapiens DSP variant protein pro...    29   3.5  
AY358267-1|AAQ88634.1|  454|Homo sapiens PUMPCn protein.               28   6.2  
AY008445-1|AAG32149.1|  490|Homo sapiens STAMP1 protein.               28   6.2  
AY008444-1|AAG32148.1|  419|Homo sapiens six transmembrane prost...    28   6.2  
AY008443-1|AAG32147.1|  454|Homo sapiens six transmembrane prost...    28   6.2  
AF526382-1|AAQ08976.1|  454|Homo sapiens protein upregulated in ...    28   6.2  
AF455138-1|AAN04080.1|  490|Homo sapiens six-transmembrane epith...    28   6.2  

>X81900-1|CAA57489.1|   70|Homo sapiens NADH oxidoreductase subunit
           MWFE protein.
          Length = 70

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -2

Query: 235 MWYEILPSFFIITAAVGLPGWGLYHIHNLTLGNHYRRSLTDRWXRALXQRDMRLTGXP-- 62
           MW+EILP   ++   + +PG    +IH  T G   +R     +  +L +RD R++G    
Sbjct: 1   MWFEILPGLSVMGVCLLIPGLATAYIHRFTNGGKEKRVAHFGYHWSLMERDRRISGVDRY 60

Query: 61  YEVNGLEAI 35
           Y   GLE I
Sbjct: 61  YVSKGLENI 69


>U54993-1|AAD00084.1|   70|Homo sapiens mitochondrial complex I
           hMWFE subunit protein.
          Length = 70

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -2

Query: 235 MWYEILPSFFIITAAVGLPGWGLYHIHNLTLGNHYRRSLTDRWXRALXQRDMRLTGXP-- 62
           MW+EILP   ++   + +PG    +IH  T G   +R     +  +L +RD R++G    
Sbjct: 1   MWFEILPGLSVMGVCLLIPGLATAYIHRFTNGGKEKRVAHFGYHWSLMERDRRISGVDRY 60

Query: 61  YEVNGLEAI 35
           Y   GLE I
Sbjct: 61  YVSKGLENI 69


>CR456889-1|CAG33170.1|   70|Homo sapiens ZNF183 protein.
          Length = 70

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -2

Query: 235 MWYEILPSFFIITAAVGLPGWGLYHIHNLTLGNHYRRSLTDRWXRALXQRDMRLTGXP-- 62
           MW+EILP   ++   + +PG    +IH  T G   +R     +  +L +RD R++G    
Sbjct: 1   MWFEILPGLSVMGVCLLIPGLATAYIHRFTNGGKEKRVAHFGYHWSLMERDRRISGVDRY 60

Query: 61  YEVNGLEAI 35
           Y   GLE I
Sbjct: 61  YVSKGLENI 69


>BC000266-1|AAH00266.1|   70|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa protein.
          Length = 70

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -2

Query: 235 MWYEILPSFFIITAAVGLPGWGLYHIHNLTLGNHYRRSLTDRWXRALXQRDMRLTGXP-- 62
           MW+EILP   ++   + +PG    +IH  T G   +R     +  +L +RD R++G    
Sbjct: 1   MWFEILPGLSVMGVCLLIPGLATAYIHRFTNGGKEKRVAHFGYHWSLMERDRRISGVDRY 60

Query: 61  YEVNGLEAI 35
           Y   GLE I
Sbjct: 61  YVSKGLENI 69


>M77830-1|AAA85135.1| 2871|Homo sapiens desmoplakin I protein.
          Length = 2871

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -2

Query: 166 YHIHNLTLGNHYRR--SLTDRWXRALXQRDMRLTGXPYEVNGLEAIPDN 26
           Y +++L LG    +   LTDRW R   Q D RL     ++  L    DN
Sbjct: 846 YPLYDLDLGKFGEKVTQLTDRWQRIDKQIDFRLWDLEKQIKQLRNYRDN 894


>AL031058-1|CAA19927.1| 2871|Homo sapiens desmoplakin protein.
          Length = 2871

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -2

Query: 166 YHIHNLTLGNHYRR--SLTDRWXRALXQRDMRLTGXPYEVNGLEAIPDN 26
           Y +++L LG    +   LTDRW R   Q D RL     ++  L    DN
Sbjct: 846 YPLYDLDLGKFGEKVTQLTDRWQRIDKQIDFRLWDLEKQIKQLRNYRDN 894


>AB209992-1|BAE06074.1| 2319|Homo sapiens DSP variant protein protein.
          Length = 2319

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -2

Query: 166  YHIHNLTLGNHYRR--SLTDRWXRALXQRDMRLTGXPYEVNGLEAIPDN 26
            Y +++L LG    +   LTDRW R   Q D RL     ++  L    DN
Sbjct: 893  YPLYDLDLGKFGEKVTQLTDRWQRIDKQIDFRLWDLEKQIKQLRNYRDN 941


>AY358267-1|AAQ88634.1|  454|Homo sapiens PUMPCn protein.
          Length = 454

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 210 KLGRISYHIILNSRIPSYTSVFVP 281
           +L R  YH+++ SR P + S F P
Sbjct: 48  RLIRCGYHVVIGSRNPKFASEFFP 71


>AY008445-1|AAG32149.1|  490|Homo sapiens STAMP1 protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 210 KLGRISYHIILNSRIPSYTSVFVP 281
           +L R  YH+++ SR P + S F P
Sbjct: 48  RLIRCGYHVVIGSRNPKFASEFFP 71


>AY008444-1|AAG32148.1|  419|Homo sapiens six transmembrane prostate
           protein v2 protein.
          Length = 419

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 210 KLGRISYHIILNSRIPSYTSVFVP 281
           +L R  YH+++ SR P + S F P
Sbjct: 48  RLIRCGYHVVIGSRNPKFASEFFP 71


>AY008443-1|AAG32147.1|  454|Homo sapiens six transmembrane prostate
           protein v1 protein.
          Length = 454

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 210 KLGRISYHIILNSRIPSYTSVFVP 281
           +L R  YH+++ SR P + S F P
Sbjct: 48  RLIRCGYHVVIGSRNPKFASEFFP 71


>AF526382-1|AAQ08976.1|  454|Homo sapiens protein upregulated in
           metastatic prostate cancer protein.
          Length = 454

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 210 KLGRISYHIILNSRIPSYTSVFVP 281
           +L R  YH+++ SR P + S F P
Sbjct: 48  RLIRCGYHVVIGSRNPKFASEFFP 71


>AF455138-1|AAN04080.1|  490|Homo sapiens six-transmembrane
           epithelial antigen of prostate 2 protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 210 KLGRISYHIILNSRIPSYTSVFVP 281
           +L R  YH+++ SR P + S F P
Sbjct: 48  RLIRCGYHVVIGSRNPKFASEFFP 71


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,506,522
Number of Sequences: 237096
Number of extensions: 680662
Number of successful extensions: 1233
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 76,859,062
effective HSP length: 77
effective length of database: 58,602,670
effective search space used: 1347861410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)