Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_B03
         (302 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   4.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   4.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   4.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   7.7  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +3

Query: 27  LSGIASKPFTS*GXPVSLISLW 92
           + G++ KP +  G  + +I++W
Sbjct: 155 VKGLSGKPLSINGALIRIIAIW 176


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +3

Query: 27  LSGIASKPFTS*GXPVSLISLW 92
           + G++ KP +  G  + +I++W
Sbjct: 121 VKGLSGKPLSINGALIRIIAIW 142


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 154

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +3

Query: 27 LSGIASKPFTS*GXPVSLISLW 92
          + G++ KP +  G  + +I++W
Sbjct: 31 VKGLSGKPLSINGALIRIIAIW 52


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 4/5 (80%), Positives = 5/5 (100%)
 Frame = -1

Query: 200 NCCCW 186
           +CCCW
Sbjct: 10  SCCCW 14


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,201
Number of Sequences: 438
Number of extensions: 1640
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)