Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_B01
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    31   0.21 
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    29   0.84 
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    28   1.5  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   7.8  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   7.8  

>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -1

Query: 456 EN*KSYQEIKKIQIVS*IGCQHASAFVKMKGEKRRL 349
           E  K+  ++ KIQ +S  G QHAS F+ +KG K+ L
Sbjct: 67  ERLKASVDVSKIQAISGAGQQHASVFL-LKGSKKAL 101


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -2

Query: 677 YREFK*IDKTRRVFFA*TQSNIYLLMFVINNVT*YRYCNISRHLCLCFQMI 525
           Y+  K  D+ +++ +        LL    N++T Y++  I +H C CFQ +
Sbjct: 21  YKSSKIQDEAKQLLYDYVYIKEKLLTTSSNSLTHYQWYLIYKHTCRCFQQV 71


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 339 ITFMLCLCTQHLTVGFVYSIKFID 268
           IT + CLC  +  + F++ +KFID
Sbjct: 130 ITSLSCLCKFYTKLRFIWGVKFID 153


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 127  IIHIVHTEYYLFISKNSE 180
            ++ I+ +EYYLF ++N E
Sbjct: 1091 LLEIIKSEYYLFFNRNRE 1108


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 414 LFEFS*FLDRIFNSLVHLSLHFLS--NSLTTKECVMIILYHLKT 539
           +  FS  L RI    +H     LS  N +T  +C+ IIL +L+T
Sbjct: 783 MLNFSSNLFRIIWQKLHEQPDILSPCNEMTVIDCIRIILIYLRT 826


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,622
Number of Sequences: 5004
Number of extensions: 47598
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)