Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_A24
(784 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 153 2e-38
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 139 5e-34
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 26 5.3
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 26 7.0
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 26 7.0
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 26 7.0
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.3
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 153 bits (372), Expect = 2e-38
Identities = 74/221 (33%), Positives = 124/221 (56%), Gaps = 1/221 (0%)
Frame = -3
Query: 776 RGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYIKMFELFNETLWRTSMGQ 597
RG PCWY P VG A D+ ++ S+++ +FR Y+ + ELF++ ++T +GQ
Sbjct: 105 RGQPCWYLMPGVG-NIAINDAFMVESAIYFLLKKHFRQESCYVDLIELFHDVTFQTELGQ 163
Query: 596 HLDHVTGNRKT-DYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDI 420
LD +T + D S F+L + + LPV+L + LA + K AQDI
Sbjct: 164 QLDLLTAPEDSVDLSKFSLQKHSFIVIYKTAFYSFYLPVALAMHLAGVATPENLKCAQDI 223
Query: 419 CLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYG 240
+ +G FQ+QDD++DC+GD TGK+GTDI + KC+W+ AL +CT QR + YG
Sbjct: 224 LIILGKYFQVQDDYLDCYGDPTVTGKIGTDILDNKCSWIINLALAKCTPEQRVILDDNYG 283
Query: 239 SSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 117
+ +R+K ++E+L++ +++ E++ I + I+ +
Sbjct: 284 RKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGV 324
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 139 bits (336), Expect = 5e-34
Identities = 76/242 (31%), Positives = 123/242 (50%), Gaps = 3/242 (1%)
Frame = -3
Query: 776 RGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYIKMFELFNETLWRTSMGQ 597
RG+ CWY VG+ A +S L+ + + FR P Y+ + + F E + T +GQ
Sbjct: 110 RGLDCWYL--VVGVRRAINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQ 167
Query: 596 HLDHVTG-NRKTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDI 420
D ++ + + SF L + + LP+ LLL+ N ++K Y + +
Sbjct: 168 QEDLLSSRDGEASLRSFDLMKYDFIITYKTSFYSFYLPIKCALLLSRNSNQKAYDTTIKL 227
Query: 419 CLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYG 240
+G FQ+QDD++DCFGD GKVG DIQ+ KCTWL A + + Q + +A YG
Sbjct: 228 SKLLGYYFQVQDDYLDCFGDYTVLGKVGMDIQDNKCTWLVCYAEKFASADQLNLLRAHYG 287
Query: 239 SSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAA--RVLFKKLLDITY 66
+ ++ IK+LY +L +P++Y E M D+I ++I+ I + +F K + Y
Sbjct: 288 KAGSENIAVIKQLYHELQIPELYHKFEDDMVDSISKEIDLIDESTGLKKCIFTKFFQLIY 347
Query: 65 NR 60
R
Sbjct: 348 KR 349
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 5.3
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -3
Query: 410 IGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSS 234
IGT FQ+ DD +D + GK G D++ T + A ++ E + +
Sbjct: 262 IGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAPVLFAWKKYPELGAMIVNR---FN 318
Query: 233 EPAHVERIKRLYE 195
P+ ++R + L E
Sbjct: 319 HPSDIQRARSLVE 331
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -3
Query: 221 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 129
++R ++ E++H+PQ+Y + Y I +Q
Sbjct: 130 IDRNRKYTEEIHIPQVYSVLFPSKYFGIAKQ 160
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 428 QDICLEIGTMFQIQDDFIDCFGDE 357
Q +C+ IG M DDF D + DE
Sbjct: 307 QSVCIAIGAMAHGPDDFSDGWVDE 330
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 6 NSGNKGFV*NILYYCL-MLPIVRNIQQLFKE--NAGGLYWYIFNLS 134
N G G V + + C+ ++P+ ++ +L +GGLY++IF L+
Sbjct: 76 NCGGGGMVWSWIIGCICLIPVSISLGELASSMPTSGGLYFWIFTLA 121
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 460 KMWMKKFINLLKTFAWK*ERCS 395
K +K+F NLLKTFA + ER +
Sbjct: 93 KRRIKRFRNLLKTFACRIERAN 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,209,274
Number of Sequences: 5004
Number of extensions: 65310
Number of successful extensions: 201
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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