Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_A23
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   3.0  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   3.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.3  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 127 SARIHEWHRQINALCNAARRYLRRRVSWRCGRSACD 234
           S R      Q+N +  + +RYLRR++    G + CD
Sbjct: 28  SGRSRVSDEQLN-MALSDQRYLRRQLKCALGEAPCD 62


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 127 SARIHEWHRQINALCNAARRYLRRRVSWRCGRSACD 234
           S R      Q+N +  + +RYLRR++    G + CD
Sbjct: 28  SGRSRVSDEQLN-MALSDQRYLRRQLKCALGEAPCD 62


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 336 HGTGTSGMLEARNASP 289
           HG+G  GM   R+ASP
Sbjct: 100 HGSGMDGMGGYRSASP 115


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 330 TGTSGMLEARNASPDQRRTRGQQQLYAQISFVVT 229
           T  + M +    S    RT GQQ  Y  ++ V+T
Sbjct: 375 TKLAEMRDNYGISAGLNRTAGQQAAYQLLALVIT 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,799
Number of Sequences: 438
Number of extensions: 4520
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)