Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_A18
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    29   0.72 
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   8.9  

>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = -3

Query: 674 QDLAEMHFIINGEDQGPCTKSIPYTRGLLHAVVDVYGTTKQVKIVQLYGVKSLQIIC--- 504
           Q  +E  FI+   D     + +  T  +L     VY  +  V  VQL+    L ++C   
Sbjct: 226 QLFSEKKFILGCNDGAVYVEDVQRTSPIL-----VYRCSNAVNCVQLFDETPLALVCTDS 280

Query: 503 RDAILQNVKNGSVKSLPLPKS 441
           +DA+L ++++ SV S  LP S
Sbjct: 281 KDAMLIDIRSNSV-SAKLPHS 300


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +1

Query: 355 CRHCSFAICHYCHAVCL*LQYYDNKKSFRLLGKGKDFTEPFFTF 486
           C+ C FA C +C A      ++ +    +L G  K   E +  +
Sbjct: 286 CQKCDFAFCSFCQAT-----WHGDLSPCKLEGDSKKLVEMYLNY 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,202,816
Number of Sequences: 5004
Number of extensions: 67436
Number of successful extensions: 165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)