Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_A18
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.58 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.58 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   4.1  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   7.1  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 566 GTTKQVKIVQLYGVKSLQIICRDAILQNVKNGSVKSL 456
           G T +VK V+++     + +  D +  NVKN SVK L
Sbjct: 227 GLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 263


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 566 GTTKQVKIVQLYGVKSLQIICRDAILQNVKNGSVKSL 456
           G T +VK V+++     + +  D +  NVKN SVK L
Sbjct: 284 GLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 320


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 560 TKQVKIVQLYGVKSLQIICRDAILQNVKNGSVKSL 456
           T +VK V+++     + +  D +  NVKN SVK L
Sbjct: 286 TTEVKSVEMHHEALTEALPGDNVGFNVKNISVKEL 320


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 276 HNKKLQFVTELSSVCKLCHL*WCFRQLQTL 365
           H ++  F    S+VC LCH    FR L +L
Sbjct: 390 HKEQQHFQPLNSAVCALCHK--VFRTLNSL 417


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = +1

Query: 334 CSGASDNCRHCSFAI 378
           C G  D+C  C + I
Sbjct: 36  CLGCGDSCHKCKYGI 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,167
Number of Sequences: 438
Number of extensions: 4693
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)