Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_A16
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   2.9  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   6.7  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   8.9  

>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 202 YCCNVNNILLYDL--LNASTKKSRVNYNPRNPSFFCEICN 315
           YC + +N+  YD   L +  K++R NY+ +N  F C +C+
Sbjct: 232 YCDHCSNVYHYDCSPLPSLNKETR-NYSQQN-GFICPLCS 269


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 136 YLCAIFFVLLWTSLFVLYPFFF 71
           +L   FF+ + T+LFV +P FF
Sbjct: 248 FLINSFFINVQTNLFVYHPHFF 269


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 423 KYRTLYFIGIIT*PFKHSFAIFGYRLLCEHSTTFFEVANFTKK 295
           K+  +YF G+       SFA  G+ L    S+ FF+V    ++
Sbjct: 359 KFMNVYFKGLSN--IISSFAFIGFTLFATLSSLFFKVLKIHRR 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,838,072
Number of Sequences: 5004
Number of extensions: 35831
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)