Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_A12
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch... 71 2e-13
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 2.6
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 27 2.6
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T... 26 4.6
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 26 4.6
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 25 8.1
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 8.1
>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 295
Score = 70.9 bits (166), Expect = 2e-13
Identities = 42/103 (40%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Frame = -3
Query: 698 NASNFAMLGLGDIVVPGIFIALLLRFDKSLKRNS-------EFYFRATFSAYILGLLATI 540
N + +MLGLGDIV+PG+ +AL+ RFD NS YFR TF AY LGL T
Sbjct: 179 NPTRLSMLGLGDIVMPGLMLALMYRFDLHYYINSTSQPKKHSTYFRNTFIAYGLGLGVTN 238
Query: 539 LVMHVFKHAQPALLYXXXXXXXXXXXXXXLRGDLPALFKYEDQ 411
++ FK AQPALLY R +L LF + +
Sbjct: 239 FALYYFKAAQPALLYLSPACIVAPLLTAWYRDELKTLFSFRSE 281
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 426 EERGQVPAEERQGQWGGEAGGHEVQQRGLRVLEHVHHQDGRQQAQDVRAERSP-EVKLRV 602
EE+ ++ AEE + E E +++ R E ++ ++A+ E + E + +
Sbjct: 550 EEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKA 609
Query: 603 PFEALIEAQQESYEDAR 653
EA +A++E+ E A+
Sbjct: 610 KREAEEKAKREAEEKAK 626
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +3
Query: 426 EERGQVPAEERQGQWGGEAGGHEVQQRGLRVLEHVHHQDGRQQAQDVRAERSP-EVKLRV 602
EE+ + AEE+ + E E +++ R E ++ ++A+ E++ E +
Sbjct: 606 EEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENA 665
Query: 603 PFEALIEAQQESYEDAR 653
EA +A++E+ E+A+
Sbjct: 666 KREAEEKAKREAEENAK 682
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +3
Query: 426 EERGQVPAEERQGQWGGEAGGHEVQQRGLRVLEHVHHQDGRQQAQDVRAERSP-EVKLRV 602
EE+ + AEE+ + E E +++ R E ++ ++A+ E++ E + +
Sbjct: 582 EEKAKREAEEKAKREAEENAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKA 641
Query: 603 PFEALIEAQQESYEDAR 653
EA +A++E+ E A+
Sbjct: 642 KREAEEKAKREAEEKAK 658
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/78 (20%), Positives = 35/78 (44%)
Frame = +3
Query: 441 VPAEERQGQWGGEAGGHEVQQRGLRVLEHVHHQDGRQQAQDVRAERSPEVKLRVPFEALI 620
V A++ +G G A E ++ ++ E V + + + ++ + + PE + E
Sbjct: 72 VSADDAKGAQGKGADEKEEKKETIQPPEEVKTEPPQPEEKEGKEAKEPEEPPKEEAEEPQ 131
Query: 621 EAQQESYEDARHHDVTQP 674
E +E E+ ++T P
Sbjct: 132 EGGEEEEEEEEEEEITDP 149
>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 477
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 516 VLEHVHHQDGRQQAQDVRAERSPEVKLRVPFEAL 617
+ H+ +G Q +V AE P++ +R+ EAL
Sbjct: 219 IASHLFDLEGNDQNANVIAELRPDITMRIDKEAL 252
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 227 YVRIVRNLTSWGCILLKA 174
+V LTSWGC LLKA
Sbjct: 567 FVLTSHQLTSWGCPLLKA 584
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 591 KLRVPFEALIEAQQESYEDARHHDVTQP 674
KL PF +E +DA+ DVT+P
Sbjct: 152 KLGTPFWPFTSFNEEDIKDAKDFDVTRP 179
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +1
Query: 247 SLSYVSLNVSVRQGRSDYTKIWIKLCLYRALLLCFSLTGELYSDFLDLSASGSAGWS 417
+LSY+S + +D+ W K L+ + + L + FLD + + WS
Sbjct: 303 ALSYLSDRLDAASQTTDFVNQWTKESLFFQICALLTTALILANKFLDDNTFTNQSWS 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,828
Number of Sequences: 5004
Number of extensions: 44021
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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