Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_A09
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0139 - 20531320-20531433,20532146-20532276,20533031-205333...    31   0.52 
03_02_0304 - 7273008-7273257,7273367-7273524,7273668-7273734,727...    30   1.6  
10_02_0189 - 6486737-6486916,6486988-6487260,6487364-6487576,648...    29   2.1  
07_03_1495 + 26983415-26984797                                         29   2.1  
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209...    28   6.5  

>11_06_0139 -
           20531320-20531433,20532146-20532276,20533031-20533382,
           20533384-20533527,20533726-20533875,20534197-20534204,
           20534267-20534471
          Length = 367

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 208 SSVHSWTNTSHYCVRSKTITSTGARHRLWYS 116
           S+ H WT    Y   S T TS G R   W+S
Sbjct: 111 STGHGWTTREKYVAISHTATSIGVRRARWFS 141


>03_02_0304 -
           7273008-7273257,7273367-7273524,7273668-7273734,
           7274461-7274645,7274801-7275215,7275311-7275418,
           7275557-7275792,7275888-7275914
          Length = 481

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 232 GCLGNSAVSSVHSWTNTSHYCVRSKTITSTG 140
           GCLGN    SV  W + + +CV    + S G
Sbjct: 257 GCLGNKGAVSVRFWLHDTSFCVACCHLASGG 287


>10_02_0189 -
           6486737-6486916,6486988-6487260,6487364-6487576,
           6489081-6489206
          Length = 263

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +1

Query: 172 NSVKYSSSC---VHSKQQSCPGSLRCCCKIECPKHPKH 276
           N V++S S    +H   Q C   LR  C + CP H  H
Sbjct: 128 NLVEFSESVGQPIHQLDQLCGQCLRSFCGVSCPNHLVH 165


>07_03_1495 + 26983415-26984797
          Length = 460

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 408 RVRYAKKVFANEEDAKRTKGKVKYDDPDVERVRRAHLND 292
           R +  K+VFA EED +    +V  DD D E  +RA  N+
Sbjct: 247 RAKLVKRVFAAEEDEEDLSWEV--DDEDEEEQQRAEANE 283


>12_02_0795 +
           23217463-23217684,23218296-23219155,23220001-23220929,
           23221184-23221968
          Length = 931

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 372 EDAKRTKGKVKYDDPDVERVRRAHLNDLENIPVFWVLGALYLTTAPE 232
           E  + + G     DPDVE +RR      +++P       LYL+  PE
Sbjct: 478 ERVRNSIGSTLQKDPDVEEMRRILSLSYDDLPQHLKTCLLYLSIFPE 524


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,859,859
Number of Sequences: 37544
Number of extensions: 327985
Number of successful extensions: 901
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)