Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_A09
(593 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039720-1|AAB96694.1| 437|Caenorhabditis elegans Hypothetical ... 29 2.5
Z81122-13|CAB03356.3| 368|Caenorhabditis elegans Hypothetical p... 29 3.3
U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like ... 29 3.3
U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like ... 29 3.3
AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-rel... 29 3.3
AC006673-4|AAF39930.1| 512|Caenorhabditis elegans Hypothetical ... 29 3.3
Z46787-1|CAA86739.2| 360|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 28 5.8
>AF039720-1|AAB96694.1| 437|Caenorhabditis elegans Hypothetical
protein F33D11.5 protein.
Length = 437
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 55 YKAVIKCVTTLKPMYTVIIERNTKGDASRRLR*WFYCVHNSVKYSSSCVHSK 210
Y + V LK M TVI+ER+ D RRL + V ++ S C K
Sbjct: 124 YSKYLDLVHKLKIMKTVILERHRARDEKRRLHAFKRLVQDTGSTISECTTQK 175
>Z81122-13|CAB03356.3| 368|Caenorhabditis elegans Hypothetical
protein T13F2.5 protein.
Length = 368
Score = 28.7 bits (61), Expect = 3.3
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Frame = -3
Query: 543 YRLSYLTYKT*SMVSINLSDPAVQSYILYSGILGLKLLAVTILTGRVRYAKKVFANEEDA 364
Y LS Y M+ + + + +YI S ++ + LLA I RY K F ++ +
Sbjct: 158 YTLSLFLYLWSLMIGLTYAFEIIPTYIHVSCLVSINLLAFVICLLNERYNSKKFVQKKFS 217
Query: 363 KRTKGKVKYDD--PDVERVRRAHL--NDLENIPVFWVLGALYL 247
R + VE ++ A+L + +I +F V+ ++L
Sbjct: 218 TRKSVTYSLSERYQIVENLKTAYLFKRGIISIILFSVICGVFL 260
>U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform b protein.
Length = 960
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 181 SHYCVRSKTITSTGARHRLWYSFR*LLCTWVSK*LHIL*LLCSKY 47
++ CV + S H Y FR + CT+ +K H L L KY
Sbjct: 579 AYNCVNKSMLNSHMKSHTNHYQFRCMDCTYATKYCHSLKLHLKKY 623
>U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform a protein.
Length = 982
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 181 SHYCVRSKTITSTGARHRLWYSFR*LLCTWVSK*LHIL*LLCSKY 47
++ CV + S H Y FR + CT+ +K H L L KY
Sbjct: 601 AYNCVNKSMLNSHMKSHTNHYQFRCMDCTYATKYCHSLKLHLKKY 645
>AF097737-1|AAD16170.1| 982|Caenorhabditis elegans
hunchback-related protein protein.
Length = 982
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 181 SHYCVRSKTITSTGARHRLWYSFR*LLCTWVSK*LHIL*LLCSKY 47
++ CV + S H Y FR + CT+ +K H L L KY
Sbjct: 601 AYNCVNKSMLNSHMKSHTNHYQFRCMDCTYATKYCHSLKLHLKKY 645
>AC006673-4|AAF39930.1| 512|Caenorhabditis elegans Hypothetical
protein K09D9.12 protein.
Length = 512
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +2
Query: 413 VNIVTANNFKPKIPEYKMYDCTAGS---LRLMDTILYV 517
+ +VT NN K E+K+ CTA S LRL + YV
Sbjct: 420 LRVVTGNNQSMKSVEFKLRTCTAVSSRCLRLQKKVAYV 457
>Z46787-1|CAA86739.2| 360|Caenorhabditis elegans Hypothetical
protein C16C10.1 protein.
Length = 360
Score = 28.3 bits (60), Expect = 4.4
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 190 SSCVHSKQQSCPG--SLRCCCKIECPKHPKHWNVLEIVQVSASHSFNVGVIVLHLALCAL 363
S C K +C G S C +EC K K +V + QVSAS S G IV L + L
Sbjct: 3 SPCESGKTTNCSGAPSSSCAKSVECCK--KQLSVGVLQQVSASSS---GAIVTSLFMTPL 57
Query: 364 RVLFI 378
V+ I
Sbjct: 58 DVVKI 62
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 308 RLTRSTSGSSYFTLPFVRFASSSFANTFLA*RTLPVNIVTANNFKPKIPEYKMYD 472
R RS++G++ F+R F + P+++ T + K KIPEY YD
Sbjct: 54 RKHRSSAGNNSVFESFLRLPPRRFEPEYYEQVKEPIDVTTIQH-KLKIPEYLTYD 107
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 308 RLTRSTSGSSYFTLPFVRFASSSFANTFLA*RTLPVNIVTANNFKPKIPEYKMYD 472
R RS++G++ F+R F + P+++ T + K KIPEY YD
Sbjct: 54 RKHRSSAGNNSVFESFLRLPPRRFEPEYYEQVKEPIDVTTIQH-KLKIPEYLTYD 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,132,727
Number of Sequences: 27780
Number of extensions: 306384
Number of successful extensions: 900
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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