Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_A08
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0337 - 22454281-22456399,22458520-22459388                       31   0.52 
11_06_0347 + 22555087-22555943,22556638-22558783                       28   3.7  
08_01_0538 - 4670159-4670251,4670332-4670393,4670476-4670599,467...    28   3.7  
10_02_0202 - 6770448-6770561,6771185-6771279,6771638-6771686,677...    27   8.5  
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936...    27   8.5  

>11_06_0337 - 22454281-22456399,22458520-22459388
          Length = 995

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -2

Query: 302 GVLMGSQLIQFPKKLISQLVSN-DIEMLRD*NYCYKNVKNDIEETL*F*DIYKK 144
           G  +  +LI+  K L ++L +N   E++R  N+CYKN+  D++  L +   + K
Sbjct: 402 GKTLDQKLIEVEKALSAELGNNLTTEVVRIINHCYKNLPPDLKTCLLYLSTFPK 455


>11_06_0347 + 22555087-22555943,22556638-22558783
          Length = 1000

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -2

Query: 302 GVLMGSQLIQFPKKLISQLVSN-DIEMLRD*NYCYKNVKNDIEETL*F*DIYKK 144
           G  +  +LI+  K L ++L +N   E+++  N+CYKN+  D++  L +   + K
Sbjct: 398 GKPLDQKLIEVEKALRAELGNNLTTEVVQIINHCYKNLPPDLKTCLLYLSTFPK 451


>08_01_0538 -
           4670159-4670251,4670332-4670393,4670476-4670599,
           4670797-4670859,4671483-4671533,4671627-4671691,
           4671797-4671935,4672332-4672388,4672729-4672827,
           4673266-4673337,4673426-4673494,4673617-4673762,
           4673881-4674157
          Length = 438

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 378 TMSICEWEVATIYMAFAFKK 319
           T+S  EWEVA +Y+AF  +K
Sbjct: 389 TLSQDEWEVAYLYLAFVLRK 408


>10_02_0202 -
           6770448-6770561,6771185-6771279,6771638-6771686,
           6771795-6771843,6772035-6772228
          Length = 166

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
 Frame = +1

Query: 334 GH-VYCSNLPFTYTHGADTILVSLILFTVP--VFF-----CVLIFGLF 453
           GH +YCS L     H  DTI+V L+ +  P  +FF     C LI G F
Sbjct: 3   GHRIYCSVLT-ALVHSCDTIIVELLNYLGPAYLFFYYCTQCFLIGGAF 49


>06_01_1133 +
           9364842-9364850,9364929-9365048,9365157-9365476,
           9366267-9366428,9367151-9367235,9367352-9367501,
           9367588-9367635,9367705-9367773,9367897-9368600,
           9369426-9369561,9369636-9369856,9370355-9370486,
           9371316-9371406,9371878-9371925,9372004-9372132,
           9372357-9372626
          Length = 897

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 486 YPAPNGKTLMGEESEYEHAKKYWDSKEYKADQNCIGTMSICE 361
           Y    G+ L+  +SE E  +   + KE+K  ++CI  M+I E
Sbjct: 168 YDTNCGEALICSDSEDEAVEDEEEKKEFKDSEDCIIRMTIQE 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,209,685
Number of Sequences: 37544
Number of extensions: 207528
Number of successful extensions: 446
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)