Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_A08
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81038-12|CAB02758.2|  380|Caenorhabditis elegans Hypothetical p...    43   1e-04
AF106589-1|AAC78228.2|  629|Caenorhabditis elegans Abnormal acet...    28   3.3  
AF025378-1|AAC14016.2|  629|Caenorhabditis elegans acetylcholine...    28   3.3  
U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to tran...    28   4.4  
U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to tran...    28   4.4  
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    27   5.8  
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        27   5.8  
AF039042-4|AAC48247.2|  332|Caenorhabditis elegans Serpentine re...    27   7.6  

>Z81038-12|CAB02758.2|  380|Caenorhabditis elegans Hypothetical
           protein C25A1.3 protein.
          Length = 380

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 26/85 (30%), Positives = 39/85 (45%)
 Frame = -1

Query: 492 ETYPAPNGKTLMGEESEYEHAKKYWDSKEYKADQNCIGTMSICEWEVATIYMAFAFKKLK 313
           ETYP  N K     + EY  AK   D+         +GT+S  EWE   +Y+ F F+K K
Sbjct: 277 ETYP--NEKLSGKSDDEYLEAKAKLDAFPEDERIKTMGTLSKSEWEAICMYLVFGFRKKK 334

Query: 312 CTQWSSDGKPTYTVSKETNQSTSKQ 238
                ++ +P  T     ++S  K+
Sbjct: 335 SEAEKTEEEPATTKPVAESESEQKE 359


>AF106589-1|AAC78228.2|  629|Caenorhabditis elegans Abnormal
           acetylcholinesterase protein2 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 128 HLTYHIFCKYLKIIKFLL 181
           HLTYH+FC++  +  F++
Sbjct: 9   HLTYHVFCQFALVTLFIV 26


>AF025378-1|AAC14016.2|  629|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 128 HLTYHIFCKYLKIIKFLL 181
           HLTYH+FC++  +  F++
Sbjct: 9   HLTYHVFCQFALVTLFIV 26


>U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform a
           protein.
          Length = 428

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +2

Query: 341 YIVATSHSHILMVPIQFWSALYSLLSQYFFACSYSDS 451
           Y V+TSHS +LM  +  W  ++S  SQ  FA  YS S
Sbjct: 35  YCVSTSHSIVLMSTL--WITIFSFCSQ--FASLYSMS 67


>U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform b
           protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +2

Query: 341 YIVATSHSHILMVPIQFWSALYSLLSQYFFACSYSDS 451
           Y V+TSHS +LM  +  W  ++S  SQ  FA  YS S
Sbjct: 53  YCVSTSHSIVLMSTL--WITIFSFCSQ--FASLYSMS 85


>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
            protein F43G9.6 protein.
          Length = 2034

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 374  MVPIQFWSALYSLLSQYFFACSYSDS 451
            MVP+ +WS  Y+ +SQ+  +  Y +S
Sbjct: 1278 MVPLDWWSRYYASMSQFHRSPGYPES 1303


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 374  MVPIQFWSALYSLLSQYFFACSYSDS 451
            MVP+ +WS  Y+ +SQ+  +  Y +S
Sbjct: 1278 MVPLDWWSRYYASMSQFHRSPGYPES 1303


>AF039042-4|AAC48247.2|  332|Caenorhabditis elegans Serpentine
           receptor, class i protein27 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
 Frame = +2

Query: 125 FHLTYHIFCK-----YLK--IIKFLLYHSLHSYNNNFSLLTSQCHCLLVD 253
           FHL YH +       +L   +I  +++HS    +  F LL  Q  CL+ D
Sbjct: 15  FHLVYHYYISGTVAFFLNTFVIYLIIFHSSRLDSFKFYLLAFQISCLICD 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,591,058
Number of Sequences: 27780
Number of extensions: 212317
Number of successful extensions: 707
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)