Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_A05
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    30   0.25 
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.1  
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    25   7.2  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    25   9.5  

>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 16/57 (28%), Positives = 33/57 (57%)
 Frame = -2

Query: 649 YXTEEAELREKLNKETKKFILPLEEATNKIEQNLLQWQHLLFGGQPPQVDFNGNIYK 479
           Y  +  +L+++L  E  + IL  ++A  KIE+++ +W+H   G +  +++   N YK
Sbjct: 749 YKDDVKDLKQRL-PELDRLILQSDQAIKKIERDMQEWKHNK-GSKMAELEKEFNQYK 803


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 402 PIRVFRTVSISRIQIKPAQAQLWKI*EELKK*FKVFSF 289
           P  +++TVS++  QI PA  ++     E ++  K F F
Sbjct: 796 PTEIYKTVSVTSTQIMPAVTKMSSFELEREQFHKAFGF 833


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 464 SPMGSVFESRR*ITTNWMGCAQSEYLELSAFHAYRSNRLKLNC 336
           +PM S F  +R  T N     Q EYL    +H   S+  KL C
Sbjct: 60  TPMSSGFMEKRDDTFN---ADQVEYLPSQDYHNLESSPFKLQC 99


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 222 PFMAFTKTEKNNVATGKNV 278
           PFMAF+ T+K +V+  +NV
Sbjct: 39  PFMAFSCTQKPSVSENENV 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,502
Number of Sequences: 5004
Number of extensions: 50124
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)