Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_A01
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    33   0.050
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp...    30   0.35 
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    27   1.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   1.9  
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.6  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   7.6  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 32.7 bits (71), Expect = 0.050
 Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -2

Query: 447 YFYFSRVW*NYDLFSVLSCFCVLLLK*FNIVIIL--RHIVFHNANYIVDEFRYCNQLCL 277
           + YF  +W  + LF ++  F +L++  FN+ +++  + ++F  +  +      C  +CL
Sbjct: 417 FSYFKAIWAEFSLFPMIIGFLLLIIGGFNLALLMQDKSVIFRMSANMAPSVMKCLPVCL 475


>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
           Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 420 NYDLFSVLSCFCVLLLK*FNIVIILRHIV-FHNANYIVDEFRYC 292
           N D    L+ +C+L    F+++  L  ++ F NA+++  E RYC
Sbjct: 215 NADSLLNLTIYCILCYPGFHLISHLNFVLRFRNADFLSGEQRYC 258


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/60 (21%), Positives = 24/60 (40%)
 Frame = +3

Query: 378 VVHKNRTVQRKDHNFTTLWKNKNKTIYKLTDCVFYYGYIVXXXXXXXXXXXYIPDKLFQL 557
           ++H  +  +  DH  T ++  K   IY L +C+   G  +           Y+    F+L
Sbjct: 783 IIHDIKEARDSDHASTRMYFTKESHIYTLLNCILESGLPMKLPRNQIPELDYLTQICFEL 842


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 420  NYDLFSVLSCFCVLLLK*FNIVIILRHIVFHNANYIVDEFRYC 292
            ++   S L  FC   +K    +I L H++ +NAN  +DE   C
Sbjct: 1443 DFQKVSSLPLFCQTEMKIVRALIDLFHLLPNNANRFMDELLIC 1485


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 387 KNRTVQRKDHNFTTLWKNKNKTIYKLTDCVFYY 485
           K+  V RKD +  T    KN    K+ D  FYY
Sbjct: 199 KSLIVPRKDVSIVTYSLQKNPITLKIRDRPFYY 231


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 509 FFIMIKVIHTR*TVSTMNTNRGSLLLNVPLIHSTT 613
           FF+ + +I TR   + MNT  G  L++  L    T
Sbjct: 15  FFVYLLIISTRLVAADMNTQYGCYLVDSSLTEQGT 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,777
Number of Sequences: 5004
Number of extensions: 43661
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)