Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_A01
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U39855-3|AAA81082.1|  467|Caenorhabditis elegans Patterned expre...    28   5.3  
Z81117-13|CAJ80831.1|  261|Caenorhabditis elegans Hypothetical p...    28   7.0  
U00049-3|AAC47059.1|  339|Caenorhabditis elegans Serpentine rece...    28   7.0  

>Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical
           protein R07B5.3 protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = -2

Query: 462 ICRLFYFYFSRVW*NYDLFSVLSCFCVLLLK*FNIVIILRHIVFHNANYIVDEFR--YCN 289
           I  L + +F  V       ++L+ FC  L    +IV +L   V++ +NY    +   +C+
Sbjct: 74  IWNLVFIFFDYVLVRIPSTTILTYFCATLDPAESIVPLLV-AVYYFSNYSSQLYTVLFCS 132

Query: 288 QLCLF*FHECNGCYEFCII 232
              L  F+E N  Y+ CI+
Sbjct: 133 TRTLILFNEKNKIYQLCIL 151


>U39855-3|AAA81082.1|  467|Caenorhabditis elegans Patterned
           expression site protein 8 protein.
          Length = 467

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 240 KTHNNRYIREIKTSTIDYNNETRQLYNSHYETQYVSKL 353
           +TH  RY+ E +    D++NE R   + ++   Y   L
Sbjct: 402 RTHTTRYVTESREYDQDHDNEERMRGDEYHHATYTHSL 439


>Z81117-13|CAJ80831.1|  261|Caenorhabditis elegans Hypothetical
           protein T06E6.15 protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 480 KIHSQLICRLFYFYFSRVW*NYDLFSVLSCFCV 382
           K+HS ++    +F+F R   NY +FS+   F V
Sbjct: 219 KLHSDVVPIEHFFHFKRFSANYHIFSIQDAFKV 251


>U00049-3|AAC47059.1|  339|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 7 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +2

Query: 77  IISKSSFPFFIGXFHCVKCPSTXWLTFSKLIRIHISYIKSRAAFFKAIRSLLIMQN 244
           +IS+    F+ G F  +      W++ SKL   H+++I    +F   I SLL+M++
Sbjct: 171 VISEKEVVFWYGGFFVIYHRRVGWVSLSKL---HLTFIFVSISFI-LISSLLLMRH 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,188,221
Number of Sequences: 27780
Number of extensions: 244034
Number of successful extensions: 625
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)