Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_P21
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    34   0.019
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    27   2.2  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    27   3.8  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    27   3.8  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    26   5.0  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    26   5.0  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    26   6.6  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   6.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   6.6  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    26   6.6  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   8.7  

>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 569 PDKDILFGSVAT-NDIDDHRKDILPLDTEQPS-QNNARGFDLHHVERGLE-NISQ 724
           P + ++F +++T   +DDH   + P D  Q    NNAR  DLHH   G + N SQ
Sbjct: 204 PQQAVIFFTLSTLKTVDDHCGYVFPYDPLQMFFANNARYHDLHHQPYGFQKNFSQ 258


>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = +2

Query: 521 SGRSDDTTEPKREPSIPDKDILFGSVATNDIDDHRKDILPLDTEQPSQNNARGFDLHHVE 700
           S   +   E  RE  IP    LF   +   +  H  D+  L TE+ + N ARG  +H   
Sbjct: 113 SKEKEPIKELVREKIIPQIRQLFSGFSQVLLQTHGDDVY-LSTEEHNGNAARGLPVHSSF 171

Query: 701 RGLENISQTN 730
           +   N SQT+
Sbjct: 172 K-QNNSSQTS 180


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +2

Query: 536 DTTEPKR-EPSIPDKDILFGSVATNDIDDHRKDILPLDTEQP 658
           DT EP+   PS  D+     S+   D D   KD++P     P
Sbjct: 47  DTFEPRHIGPSKTDQQYQLESLGYKDFDSFLKDVIPDSVRTP 88


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -3

Query: 316 PTTCMTVTAPYVMAIQYMEPSSTPPAINGHILWVISSIASSMATKAPMDGNTTMYSA 146
           P    ++  P + A+  ME  + PP +        SSIA    +  P+ G  TM+ A
Sbjct: 427 PLVTPSLPVPSIPAVPGMEAMAMPPGVT-------SSIAVPTTSSMPLQGMPTMFGA 476


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 674 EHCSVKVVLYRAEEYLSYD 618
           EH  +KV+ Y   +YL YD
Sbjct: 318 EHSEIKVIQYSPPQYLDYD 336


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +2

Query: 542 TEPKREPSIPDKDILFGSVATNDIDDHRKDILPLDTEQPSQNNARGFDLHHVERGLENIS 721
           T    +PS P K +LFG+     I     +I  +  +  SQ    G +L  + R   + +
Sbjct: 489 TSVSPQPSSPTKSLLFGARLDAIILREHSNIPNIVMQCTSQVENFGLNLQGIYRVPSSSA 548

Query: 722 QTNVVREAF 748
           + N++R  F
Sbjct: 549 RVNMLRSQF 557


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 409 RCITGRIPFSCSSGSTALRYLSWLIFCLSETWT 507
           + I G++ FS + G T    +   IFC  ETWT
Sbjct: 112 KSIFGKVAFSVTIGITC-PIVFIAIFCFFETWT 143


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 503 HVSERQNISQDRYLSAVLPEEQENGIL 423
           H   +  I  + Y  A+ P+E ENG+L
Sbjct: 128 HTVSKDLIHWENYPIAIYPDEHENGVL 154


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 391 TGIVGSSTSNTKGSADSIISRPS 323
           TG+ GS+ +NT  +  S+ ++PS
Sbjct: 555 TGLFGSNNANTTNTGGSLFNKPS 577


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = -3

Query: 418 LYIFALMRVTGIVGSSTSNTKGSADSIISRPSRWPTTCMTVTAPYVMAIQYMEPSST 248
           + +F L+ +TGI  S  +  +   D  ++R S W    +   A  +    Y+  ++T
Sbjct: 39  ILVFTLLSITGIYSSLVAYQQSLYDQSLARWSAWYAESINAEANVITKQLYLLGTNT 95


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 536 DTTEPKREPSIPDKDILFGSVATNDIDDHRKDIL 637
           D +EP R+ +    D + GS+  ++ID+  +++L
Sbjct: 743 DESEPYRKMTAETVDKVIGSLGVSEIDERLEELL 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,296,646
Number of Sequences: 5004
Number of extensions: 75115
Number of successful extensions: 212
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)