Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_P21
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0966 - 24906361-24906958,24907084-24907250,24907403-249076... 31 0.98
01_07_0039 - 40667598-40669880 30 2.3
01_01_1019 + 8057784-8058983 29 3.0
05_01_0564 - 4919294-4919391,4919491-4919620,4919700-4919789,491... 29 5.2
11_05_0089 + 18975637-18977439 28 9.1
08_02_0894 + 22346027-22347925 28 9.1
08_01_0339 - 3003626-3004070,3004467-3004636,3004907-3005020,300... 28 9.1
06_02_0197 - 12912818-12913411,12913505-12913732 28 9.1
02_05_0029 - 25194827-25195095,25195129-25197970 28 9.1
>12_02_0966 -
24906361-24906958,24907084-24907250,24907403-24907650,
24907824-24908001,24908196-24908372,24908459-24908563,
24908633-24908770,24909757-24910836
Length = 896
Score = 31.1 bits (67), Expect = 0.98
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = -3
Query: 316 PTTCMTVTAPYVMAIQYMEPSSTPPAINGHILWVISSIASSMATKAPMDGNTTMYSA 146
PT+ TAP + ++ + PSS AI+GH V S+ A + A ++ ++ SA
Sbjct: 41 PTSPPPPTAPPLPVVRPLTPSSLCSAIHGHRAGVSSAAAGAAAAQSSSSSSSAAASA 97
>01_07_0039 - 40667598-40669880
Length = 760
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +2
Query: 533 DDTTEPKREPSIPDKDILFGSVATNDIDDHRKDILPLDTEQPSQNNARGFDLHHVERGLE 712
D+ K++ S+ +KD+ S D+DD D PLD + + +D+H+ E E
Sbjct: 231 DENHVDKKQKSVCEKDVHCVSSPHVDLDDRFTD--PLDNREDELCSITQYDVHNFENDRE 288
Query: 713 NIS 721
++
Sbjct: 289 IVN 291
>01_01_1019 + 8057784-8058983
Length = 399
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 237 IAGGVLLGSIYWIAITYGAV 296
IAGG+++G + WI ++Y AV
Sbjct: 252 IAGGLVVGGVSWIGLSYAAV 271
>05_01_0564 -
4919294-4919391,4919491-4919620,4919700-4919789,
4919882-4919987,4920087-4920187,4920347-4920442,
4920549-4920648,4920761-4920897,4920980-4921111,
4921222-4921320,4921397-4921594,4921715-4921892,
4922020-4922075,4922168-4922320,4922422-4922514,
4922605-4922706,4922817-4922878,4922995-4923090,
4923354-4923453,4923546-4923617,4923728-4923775,
4923853-4923996
Length = 796
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 162 VFPSMGAFVAMLDAMEEITHKICPFIAGGVLLGSIYWIAIT 284
++PS ++D++E ITH +C + + S YW+ ++
Sbjct: 447 IYPSYDYAHCLVDSLENITHSLCT-LEFDIRRPSYYWLLVS 486
>11_05_0089 + 18975637-18977439
Length = 600
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 515 RYSGRSDDTTEPKREPSIPDKDILFGSVATNDIDDHRKD 631
R + D+ P+R ++P +DILF S ++ + +DH D
Sbjct: 170 RSAAAIDEDARPRRWRTMPPEDILFESPSSGE-EDHADD 207
>08_02_0894 + 22346027-22347925
Length = 632
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -3
Query: 349 ADSIISRPSRWPTTCM--TVTAPYVMAIQYMEPSSTPPAINGHILWVISSIASSMATKAP 176
++ I+SRPS AP + + EP + P + HI+W+I + ++ KA
Sbjct: 395 SELIVSRPSASARLAAEGNELAPSLAELDLPEPDNQTP-LAAHIIWIIVVLEHNLEGKAS 453
Query: 175 MDGNTTM 155
+ +T +
Sbjct: 454 LYRDTAL 460
>08_01_0339 -
3003626-3004070,3004467-3004636,3004907-3005020,
3005592-3005704,3005848-3005926
Length = 306
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 524 GRSDDTTEPKREPSIPDKDILFGSVATNDIDDHRKDILPLDTEQPSQNNA 673
G DDTTE + P+ G A+ D KD LP+ ++ N A
Sbjct: 215 GTKDDTTEESESSAAPESSQAGGHGASTP-SDTEKDDLPVSSQLLDNNTA 263
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 569 PDKDILFGSVAT-NDIDDHRKDILPLDT--EQPSQNNARGFDLHHVERG 706
P ++F S+ T +DDH LP + ++ +NNA D+HH RG
Sbjct: 171 PRASVVFFSLCTAKGVDDHCGLWLPAASPLQRVFRNNAAYHDVHHQRRG 219
>02_05_0029 - 25194827-25195095,25195129-25197970
Length = 1036
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 522 VAGQTTPQNPNASHLSPTRIFCSAL--LLPTISTIIGKIFFRSIQNNLHR 665
++G+ TP+ N S LS I ++ LP + +GK+ + S Q+NL R
Sbjct: 259 LSGRMTPRFGNMSSLSKLDISFNSFSGYLPNVFGSLGKLEYFSAQSNLFR 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,463,666
Number of Sequences: 37544
Number of extensions: 543182
Number of successful extensions: 1524
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1524
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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