Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_P21
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonin... 32 0.50
Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical p... 31 0.66
U56964-1|AAB54033.2| 555|Caenorhabditis elegans Twik family of ... 31 0.87
AF083645-1|AAC32856.1| 555|Caenorhabditis elegans potassium cha... 31 0.87
AC006670-3|ABC71823.1| 350|Caenorhabditis elegans Patched relat... 30 2.0
AC006670-2|ABC71822.1| 901|Caenorhabditis elegans Patched relat... 30 2.0
Z49968-3|CAA90260.1| 189|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 29 3.5
Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical pr... 29 4.7
AL132862-14|CAB60548.1| 541|Caenorhabditis elegans Hypothetical... 29 4.7
AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger p... 29 4.7
AF003136-4|AAK93853.2| 368|Caenorhabditis elegans Acyltransfera... 29 4.7
Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical pr... 28 6.2
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 28 6.2
Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical pr... 28 8.1
AL032647-1|CAA21688.2| 470|Caenorhabditis elegans Hypothetical ... 28 8.1
>U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 1192
Score = 31.9 bits (69), Expect = 0.50
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = -3
Query: 379 GSSTSNTKGSADSIISRPSRWPTTCMTVTAPYVMAIQYMEPSSTPPAINGHILWVISSIA 200
G+ S+ G + + P+R T T ++ + Q M +STP A G ++ A
Sbjct: 52 GTRKSSGSGLKTANLKHPARPSTESSTSSSHHQRPAQEMNGTSTPTATGGGGTSGATTTA 111
Query: 199 SSMATKAPMDGNTTMYSA 146
SS A A G++ YS+
Sbjct: 112 SSGAPAASSGGSSARYSS 129
>Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical
protein Y57G11C.5 protein.
Length = 512
Score = 31.5 bits (68), Expect = 0.66
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -3
Query: 403 LMRVTGIVGS-STSNTKGSADSIISRPSRWPTTCMTVTAPYVMAIQYMEPSSTPPAINGH 227
L VTG GS S SNT +I+ RW T C+T T P P +
Sbjct: 2 LSMVTGRTGSESNSNTSDGEKTIL----RWTTACLTTTCPIFSRNPQFNMIYCP--VPSL 55
Query: 226 ILWVISSIASSMA 188
+++VI ++AS A
Sbjct: 56 LMYVIITLASENA 68
>U56964-1|AAB54033.2| 555|Caenorhabditis elegans Twik family of
potassium channelsprotein 16 protein.
Length = 555
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 552 NASHLSPTRIFCSALLLPTISTIIGKIFFRSIQNNLHRTM 671
N H P + CS L+L + + +G F I+ N H M
Sbjct: 16 NFEHAKPFTLHCSLLMLVLLYSFLGGFIFDRIETNAHAEM 55
>AF083645-1|AAC32856.1| 555|Caenorhabditis elegans potassium
channel subunit n2P16 protein.
Length = 555
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 552 NASHLSPTRIFCSALLLPTISTIIGKIFFRSIQNNLHRTM 671
N H P + CS L+L + + +G F I+ N H M
Sbjct: 16 NFEHAKPFTLHCSLLMLVLLYSFLGGFIFDRIETNAHAEM 55
>AC006670-3|ABC71823.1| 350|Caenorhabditis elegans Patched related
family protein12, isoform b protein.
Length = 350
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 6 HLVKNHLXIDQFFITC*YXVHQSCLQXWVDEXQRGNITR--KVLCPQCKAEY-IVVFPSM 176
H +N +D+FFIT + +H + LQ W RG+ R + + + AE+ + VF
Sbjct: 113 HSAENRTVLDRFFIT--FAIHGTNLQSW---PARGDALREWRNVVDKYSAEFGLSVFSDD 167
Query: 177 GAFVAMLDAM 206
G +V +++ M
Sbjct: 168 GIYVDLIENM 177
>AC006670-2|ABC71822.1| 901|Caenorhabditis elegans Patched related
family protein12, isoform a protein.
Length = 901
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 6 HLVKNHLXIDQFFITC*YXVHQSCLQXWVDEXQRGNITR--KVLCPQCKAEY-IVVFPSM 176
H +N +D+FFIT + +H + LQ W RG+ R + + + AE+ + VF
Sbjct: 664 HSAENRTVLDRFFIT--FAIHGTNLQSW---PARGDALREWRNVVDKYSAEFGLSVFSDD 718
Query: 177 GAFVAMLDAM 206
G +V +++ M
Sbjct: 719 GIYVDLIENM 728
>Z49968-3|CAA90260.1| 189|Caenorhabditis elegans Hypothetical
protein M110.3 protein.
Length = 189
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 57 YXVHQSCLQXWVDEXQRGNITRKVLCPQCKAEY 155
+ VH CL W + N ++V+C QC+ Y
Sbjct: 41 HWVHHQCLAMWFS---KANAVQQVMCIQCQTRY 70
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -3
Query: 376 SSTSNTKGSADSIISRPSRWPTTCMTVTAPYVMAIQYMEPSSTPPAINGHILWV-ISSIA 200
+STS T+ S ++ + PS P T TVT+ + P+ST V S+ A
Sbjct: 437 ASTSTTEPSTSTVTTSPSTSPVT-STVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTA 495
Query: 199 SSMATKAPMDGNTT 158
S +T P ++T
Sbjct: 496 PSTSTTGPSSSSST 509
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -3
Query: 376 SSTSNTKGSADSIISRPSRWPTTCMTVTAPYVMAIQYMEPSSTPPAINGHILWV-ISSIA 200
+STS T+ S ++ + PS P T TVT+ + P+ST V S+ A
Sbjct: 437 ASTSTTEPSTSTVTTSPSTSPVT-STVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTA 495
Query: 199 SSMATKAPMDGNTT 158
S +T P ++T
Sbjct: 496 PSTSTTGPSSSSST 509
>Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical
protein F58E6.1b protein.
Length = 764
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 63 VHQSCLQXWVDEXQRGNITRKVLCPQCKAEY 155
VH+ CL WV N++ K C CK+EY
Sbjct: 75 VHEECLTKWV------NMSNKKTCEICKSEY 99
>Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical
protein F58E6.1a protein.
Length = 966
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 63 VHQSCLQXWVDEXQRGNITRKVLCPQCKAEY 155
VH+ CL WV N++ K C CK+EY
Sbjct: 75 VHEECLTKWV------NMSNKKTCEICKSEY 99
>AL132862-14|CAB60548.1| 541|Caenorhabditis elegans Hypothetical
protein Y73F8A.20 protein.
Length = 541
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = -3
Query: 394 VTGIVGSSTSNTKGSADSIISRPS-RWPTTCMTVTAP-YVMAIQYMEPSSTPPAINGHIL 221
V+ + G + +T+ S S P+ RW T C+ T P + + Q+ S P++ ++
Sbjct: 26 VSIVTGKNQQSTESSNSSEGDSPAIRWTTACLNTTCPIFSRSPQFNMIYSPAPSL---MM 82
Query: 220 WVISSIASSMA 188
+V+ ++AS A
Sbjct: 83 YVVVTLASEHA 93
>AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger
protein STAT-B protein.
Length = 810
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 63 VHQSCLQXWVDEXQRGNITRKVLCPQCKAEY 155
VH+ CL WV N++ K C CK+EY
Sbjct: 121 VHEECLTKWV------NMSNKKTCEICKSEY 145
>AF003136-4|AAK93853.2| 368|Caenorhabditis elegans
Acyltransferase-like protein 11 protein.
Length = 368
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 528 GQTTPQNPNASHLSPTRIFCSALLLPTISTIIGKIFFRSIQNN 656
G P P + L T F +ALL P S IG+I+ +I ++
Sbjct: 313 GSALPCVPISQTLPSTLFFSAALLAPFFSRTIGRIYLLTIASS 355
>Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical
protein H39E23.1a protein.
Length = 1192
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = -3
Query: 379 GSSTSNTKGSADSIISRPSRWPTTCMTVTAPYVMAIQYMEPSSTPPAINGHILWVISSIA 200
G+ S+ G + + P+R T T ++ + Q M +ST A G ++ A
Sbjct: 52 GTRKSSGSGLKTANLKHPARPSTESSTSSSHHRRPAQEMNGTSTATATGGGGTSGATTTA 111
Query: 199 SSMATKAPMDGNTTMYSA 146
SS A A G++ YS+
Sbjct: 112 SSGAPAASSGGSSARYSS 129
>Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical
protein H39E23.1a protein.
Length = 1192
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = -3
Query: 379 GSSTSNTKGSADSIISRPSRWPTTCMTVTAPYVMAIQYMEPSSTPPAINGHILWVISSIA 200
G+ S+ G + + P+R T T ++ + Q M +ST A G ++ A
Sbjct: 52 GTRKSSGSGLKTANLKHPARPSTESSTSSSHHRRPAQEMNGTSTATATGGGGTSGATTTA 111
Query: 199 SSMATKAPMDGNTTMYSA 146
SS A A G++ YS+
Sbjct: 112 SSGAPAASSGGSSARYSS 129
>Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical
protein R09H10.4 protein.
Length = 877
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 207 EEITHKICPFIAGGVLLGSIYWIAITYGAV 296
E I +CP +A LG+++W +G +
Sbjct: 294 EAILACVCPLLATSSALGTLFWFGFRFGTI 323
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -3
Query: 382 VGSSTSNTKGSADSIISRPS--RWPTTCMTVTAPYVMAIQYMEPSSTPP 242
+ S TS + +A S IS PS + TT +T+P + M P TPP
Sbjct: 202 LSSITSISSSAAGSSISAPSTSQPSTTSSLITSPPSTSSSSMAPRKTPP 250
>Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical
protein R09E10.5 protein.
Length = 1459
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 459 AKIPVLAYILPFGNVDNDRAIVAGQTTPQNPNASHLSPTRIF 584
A P LAY G ++ + + G TPQNP + +SP +IF
Sbjct: 39 ATFPPLAYNQNIGGINQN---IGG--TPQNPTINQVSPGQIF 75
>AL032647-1|CAA21688.2| 470|Caenorhabditis elegans Hypothetical
protein Y57A10B.1 protein.
Length = 470
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 63 VHQSCLQXWVDEXQRGNITRKVLCPQCKAEY 155
VH SCL W+D R + R +C C +Y
Sbjct: 222 VHVSCLMHWLDISSR-KLHRPAICELCLYKY 251
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,484,825
Number of Sequences: 27780
Number of extensions: 434754
Number of successful extensions: 1298
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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