Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_P20
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    56   5e-09
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    30   0.30 
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    26   4.9  

>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 56.0 bits (129), Expect = 5e-09
 Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 10/212 (4%)
 Frame = +3

Query: 135 YSTTMTELDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSE 314
           Y     +LDL   G  VWLVK+PK++ +KW   P + +   L   RV     ++QL L  
Sbjct: 16  YEDDAGDLDLGQIGSRVWLVKIPKFLMDKWNSIPED-DAANLGCVRVKND--EIQLLLQN 72

Query: 315 AVLCLKDPGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKL 494
           +      P    +PK + L V N   ++  VF     + T S +  T    + G +  + 
Sbjct: 73  S------PENADVPKIYNLRVMNKFVRNSYVFRE---SETSSSMKSTA---LVGTVAHEC 120

Query: 495 ECRP--NDDVTYYKLKSESIKKASMPQRQVQQL-DRIVQNFKPVSDHPHN------IDYQ 647
              P  NDD  Y ++  +    AS P+R+VQ + DR      P +    +      I   
Sbjct: 121 NVSPVINDD--YRRVMQKRALAASAPKRKVQMIDDRGGSLLAPGTLGSRSRSTTSFIRNV 178

Query: 648 ERKKAEG-KKARDDKEAVLNMLFAAFEKHXYY 740
           + +  EG K +R  +  +L++LF  FE + Y+
Sbjct: 179 KPRTGEGLKNSRIPRNELLDILFKCFEDYEYW 210


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
 Frame = +3

Query: 408 FSHIAPTNTDSVVPETENLYMEGRIVQK-LECRPNDDVTYYKLKSESIK-------KASM 563
           FS ++ T+T  VVP    L+     +QK +EC P+  V Y++ + E ++       + S 
Sbjct: 29  FSRLSETSTPGVVPSVSTLWRLLFELQKMIECEPS-CVEYFRQRKEELESHVDSEIETSK 87

Query: 564 PQRQVQQLDRIVQNFK 611
            +  V +++  V+ FK
Sbjct: 88  DESSVNKVEEKVEEFK 103


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 477 RIVQKLECRPNDDVTYYKLKSESIKKASMPQRQVQQLD 590
           R  Q+ +  PN   T  K+KSE ++   M Q++ +QLD
Sbjct: 558 RTTQQPKSTPNH--TNIKVKSERLQHVRMAQQKAEQLD 593


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,365
Number of Sequences: 5004
Number of extensions: 62333
Number of successful extensions: 192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)