Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_P20
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0869 - 32591669-32591794,32591923-32592075,32592293-325923...    38   0.008
05_06_0030 - 25060711-25060830,25060981-25061130,25061473-250615...    36   0.026
01_01_0319 - 2574583-2574675,2575853-2576055,2576140-2576364,257...    31   0.96 
08_02_1152 + 24720397-24720636,24720739-24720951,24721617-247216...    29   5.1  
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472...    28   9.0  
05_04_0073 + 17669311-17671635                                         28   9.0  
01_06_0163 - 27124246-27124335,27124454-27124663,27124746-271248...    28   9.0  

>01_06_0869 -
           32591669-32591794,32591923-32592075,32592293-32592367,
           32592467-32592597,32593788-32593896,32594745-32594936
          Length = 261

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 16/207 (7%)
 Frame = +3

Query: 156 LDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLK- 332
           L+ +   R VWL+K P  ++  W++A               G  +    + +  V   K 
Sbjct: 8   LETARADRSVWLMKCPTVVSRAWQEAATAAASSSSSSDAAAGANSNSNANPNPVVAKFKM 67

Query: 333 ---DPGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKLECR 503
                G  + PK +          SL +F    P    S   + + L  EG++  K +  
Sbjct: 68  EMAQTGNGNTPKSY----------SLNMFKDFVPMCVFSESNQGK-LSCEGKVGHKFDME 116

Query: 504 PNDD--VTYYKLKSESIKKASMPQRQVQQL-DRIVQNFKP-------VSDHPHNIDYQER 653
           P+ D  V Y KL  E  +K+ +  R++  L +    + +P       +S  P   + +  
Sbjct: 117 PHSDNLVNYGKLCRERTQKSMIKNRKLMVLANDNGMSMRPLPGLVGLMSSGPKQKEKKPL 176

Query: 654 --KKAEGKKARDDKEAVLNMLFAAFEK 728
             K ++ K+ R D+  + N+LF  FE+
Sbjct: 177 PVKPSDMKRTRRDRRELENILFKLFER 203


>05_06_0030 -
           25060711-25060830,25060981-25061130,25061473-25061544,
           25061631-25061761,25062487-25062635,25062998-25063239
          Length = 287

 Score = 36.3 bits (80), Expect = 0.026
 Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 39/230 (16%)
 Frame = +3

Query: 156 LDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLKD 335
           L+ +   R VWL+K P  +++ W+ A  + +      + V    AKV LSL   +L  ++
Sbjct: 8   LETARAERSVWLMKCPPVVSHAWQGAVSSSDAAGSNPNPVV---AKVVLSLD--LLRSEE 62

Query: 336 PGEQ-SIPK----------------------EHKLDVSNVNT------QSLGVFSHIAPT 428
           P  Q S+P+                      + K++++  NT       SL +     P 
Sbjct: 63  PSLQASLPRPLPLPCGFECYIIHYNMVLLAWQFKMEMAQTNTGNTPKSYSLNMSKDFVPM 122

Query: 429 NTDSVVPETENLYMEGRIVQKLECRPNDD--VTYYKLKSESIKKASMPQRQVQQLDRIVQ 602
              S   + + L  EG++  K + +P+ D  V Y KL  E  +K+ +  R+VQ ++    
Sbjct: 123 CVFSESNQGK-LSCEGKVEHKFDMKPHSDNLVNYGKLCRERTQKSMIKTRKVQVIEDHRM 181

Query: 603 NFKPVSDHPHNI--DYQERKK------AEGKKARDDKEAVLNMLFAAFEK 728
           +  P+      I    +E+KK      ++ K+ R D+  + N++F  FE+
Sbjct: 182 SLIPLPGMVGLIPSGSKEKKKQTPTKPSDAKRIRRDRRELENIIFKLFER 231


>01_01_0319 -
           2574583-2574675,2575853-2576055,2576140-2576364,
           2576590-2576603,2577146-2577210
          Length = 199

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 31/136 (22%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
 Frame = +3

Query: 228 KAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLKDPGEQSIPKEHKLDVSNVNTQSLGV 407
           K    +  GKL+IS++  T  K+Q+S  +    L+      +   H+L +S V  +S  V
Sbjct: 45  KRKATVTPGKLQISKIE-TPHKLQISEVQTPHKLQI---SEVETPHQLQISEVEIKSKEV 100

Query: 408 FSHIAPTNTDSVVPETENLYMEGRI-VQKLECRPNDDV-TYYKLKSESIKKASMPQRQVQ 581
            + +   ++  +  E ENL ++  +  ++LE   N  +    +LK++ I+     ++Q  
Sbjct: 101 QALVLAQDSQRISQENENLRLQLALKTKELEHEENQKLRLQLELKNKDIESL---KKQND 157

Query: 582 QLDRIVQNFKPVSDHP 629
           +L   ++ +K  +  P
Sbjct: 158 ELKAEIEYYKKTTKPP 173


>08_02_1152 +
           24720397-24720636,24720739-24720951,24721617-24721697,
           24721781-24721867,24721970-24722065,24722179-24722232,
           24722326-24723375,24723468-24723507,24723551-24723756
          Length = 688

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 540 ESIKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKA 662
           E ++  + P      L  + +  K V +HPH+I Y+  +K+
Sbjct: 568 EMLRSQATPTEATSALQTLFKIIKNVIEHPHDIKYRRLRKS 608


>06_03_0092 +
           16546204-16546693,16546958-16547028,16547145-16547221,
           16547322-16547469,16550080-16550148,16550348-16550509,
           16550625-16550785,16551240-16551324,16552068-16552144,
           16552234-16552441,16555844-16555921,16556463-16556591,
           16556665-16556808,16556893-16557038,16557137-16557293,
           16557391-16557449,16557582-16557741,16557849-16557998,
           16558093-16558229,16558325-16558471,16558556-16558657,
           16558742-16558799,16558895-16558996,16559729-16559766,
           16559868-16559994,16560075-16560245,16560334-16560465,
           16560577-16560686,16560866-16560926,16561031-16561208,
           16561293-16561498,16561590-16561709,16561903-16562001,
           16562152-16562370,16562701-16562840,16563175-16563286,
           16563375-16563425,16563509-16563589,16563683-16563853,
           16563934-16564089,16564174-16564380,16565145-16565215,
           16565315-16565414,16565783-16565839,16566156-16566212,
           16566308-16566388,16566467-16566606,16566641-16566764
          Length = 2041

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +3

Query: 351 IPKEHKLDVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKL 494
           + K  K DV+NV+T+ +G F ++AP     +  E  +++  G ++ +L
Sbjct: 427 LAKLAKNDVTNVSTRVMGTFGYLAPKYAWKLA-EKSDMFSFGVVLMEL 473


>05_04_0073 + 17669311-17671635
          Length = 774

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -3

Query: 231 LFPICLLYI*VLLPTILLYQYLI 163
           LF I +LY  ++LPTI LY +LI
Sbjct: 607 LFVILVLYPELILPTIFLYLFLI 629


>01_06_0163 -
           27124246-27124335,27124454-27124663,27124746-27124875,
           27124973-27125143,27125268-27125387,27125642-27125746,
           27125819-27126471
          Length = 492

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 372 DVSNVNTQSLGVFSHIAPTNTDS-VVPETENLYMEGRIVQKLECRPNDDVTYYKLKSES 545
           D S +NT+ +G + ++AP   +S ++ E  ++Y  G +V        D V Y K   E+
Sbjct: 337 DSSYINTRVMGTYGYVAPEYANSGMLNEKSDIYSFG-VVLLESVTARDPVDYSKPADET 394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,522,907
Number of Sequences: 37544
Number of extensions: 369109
Number of successful extensions: 884
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)