Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_P20
(740 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U25188-1|AAA86888.1| 277|Drosophila melanogaster initiation fac... 281 9e-76
AY071514-1|AAL49136.1| 277|Drosophila melanogaster RE56801p pro... 281 9e-76
AE014297-1190|AAF54548.1| 277|Drosophila melanogaster CG6538-PA... 281 9e-76
U02461-1|AAA81888.1| 276|Drosophila melanogaster dTFIIF30 protein. 258 4e-69
AE014296-744|AAF47827.2| 505|Drosophila melanogaster CG11593-PA... 33 0.41
X98082-1|CAA66706.1| 1332|Drosophila melanogaster RADHA protein ... 29 8.8
X98081-2|CAA66705.1| 1332|Drosophila melanogaster RADHA protein ... 29 8.8
AF293971-1|AAG53639.1| 1673|Drosophila melanogaster Lilliputian ... 29 8.8
AF289034-1|AAK18163.1| 1673|Drosophila melanogaster lilliputian ... 29 8.8
AE014297-3789|AAF56461.1| 1332|Drosophila melanogaster CG11908-P... 29 8.8
AE014134-513|AAN10400.1| 1673|Drosophila melanogaster CG8817-PC,... 29 8.8
AE014134-512|AAN10399.1| 1673|Drosophila melanogaster CG8817-PB,... 29 8.8
AE014134-511|AAF51180.2| 1673|Drosophila melanogaster CG8817-PA,... 29 8.8
>U25188-1|AAA86888.1| 277|Drosophila melanogaster initiation factor
TFIIF smallsubunit protein.
Length = 277
Score = 281 bits (688), Expect = 9e-76
Identities = 138/202 (68%), Positives = 162/202 (80%), Gaps = 6/202 (2%)
Frame = +3
Query: 153 ELDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLK 332
+LDLSN GRGVWLVKVPKYIA KWEKAP N++VGKL+I++ PG +A+V LSL+ AVL L
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLAL- 73
Query: 333 DPGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTN------TDSVVPETENLYMEGRIVQKL 494
DP E+ IP EH LDVS V Q+LGVFSH+AP++ T + P+ E LYMEGRIVQKL
Sbjct: 74 DP-EEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIVQKL 132
Query: 495 ECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKAEGKK 674
ECRP D Y KLK ESI+KAS PQR+VQ +D+IVQNFKPV DH HNI+Y+ERKKAEGKK
Sbjct: 133 ECRPIADNCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKK 192
Query: 675 ARDDKEAVLNMLFAAFEKHXYY 740
ARDDK AV++MLF AFEKH YY
Sbjct: 193 ARDDKNAVMDMLFHAFEKHQYY 214
>AY071514-1|AAL49136.1| 277|Drosophila melanogaster RE56801p
protein.
Length = 277
Score = 281 bits (688), Expect = 9e-76
Identities = 138/202 (68%), Positives = 162/202 (80%), Gaps = 6/202 (2%)
Frame = +3
Query: 153 ELDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLK 332
+LDLSN GRGVWLVKVPKYIA KWEKAP N++VGKL+I++ PG +A+V LSL+ AVL L
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLAL- 73
Query: 333 DPGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTN------TDSVVPETENLYMEGRIVQKL 494
DP E+ IP EH LDVS V Q+LGVFSH+AP++ T + P+ E LYMEGRIVQKL
Sbjct: 74 DP-EEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIVQKL 132
Query: 495 ECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKAEGKK 674
ECRP D Y KLK ESI+KAS PQR+VQ +D+IVQNFKPV DH HNI+Y+ERKKAEGKK
Sbjct: 133 ECRPIADNCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKK 192
Query: 675 ARDDKEAVLNMLFAAFEKHXYY 740
ARDDK AV++MLF AFEKH YY
Sbjct: 193 ARDDKNAVMDMLFHAFEKHQYY 214
>AE014297-1190|AAF54548.1| 277|Drosophila melanogaster CG6538-PA
protein.
Length = 277
Score = 281 bits (688), Expect = 9e-76
Identities = 138/202 (68%), Positives = 162/202 (80%), Gaps = 6/202 (2%)
Frame = +3
Query: 153 ELDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLK 332
+LDLSN GRGVWLVKVPKYIA KWEKAP N++VGKL+I++ PG +A+V LSL+ AVL L
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLAL- 73
Query: 333 DPGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTN------TDSVVPETENLYMEGRIVQKL 494
DP E+ IP EH LDVS V Q+LGVFSH+AP++ T + P+ E LYMEGRIVQKL
Sbjct: 74 DP-EEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIVQKL 132
Query: 495 ECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKAEGKK 674
ECRP D Y KLK ESI+KAS PQR+VQ +D+IVQNFKPV DH HNI+Y+ERKKAEGKK
Sbjct: 133 ECRPIADNCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKK 192
Query: 675 ARDDKEAVLNMLFAAFEKHXYY 740
ARDDK AV++MLF AFEKH YY
Sbjct: 193 ARDDKNAVMDMLFHAFEKHQYY 214
>U02461-1|AAA81888.1| 276|Drosophila melanogaster dTFIIF30 protein.
Length = 276
Score = 258 bits (633), Expect = 4e-69
Identities = 132/201 (65%), Positives = 155/201 (77%), Gaps = 5/201 (2%)
Frame = +3
Query: 153 ELDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLK 332
+LDLSN GRGVWLVKVPKYIA KWEKAP N++VGKL+I++ PG +A+V LSL+ AVL L
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLAL- 73
Query: 333 DPGEQSIPKEHKLDVSNVNTQSLGVF-SHIAPTNTDSVVP----ETENLYMEGRIVQKLE 497
DP E+ IP EH LDVS V Q+LG + P + +P + E LYMEGRIVQKLE
Sbjct: 74 DP-EEKIPTEHILDVSQVTKQTLGYSRTWHRPMARRTRLPRRHSDNEKLYMEGRIVQKLE 132
Query: 498 CRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKAEGKKA 677
CRP D Y KLK ESI+KAS PQR+VQ +D+IVQNFKPV DH HNI+Y+ERKKAEGKKA
Sbjct: 133 CRPIADNCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKKA 192
Query: 678 RDDKEAVLNMLFAAFEKHXYY 740
RDDK AV++MLF AFEKH YY
Sbjct: 193 RDDKNAVMDMLFHAFEKHQYY 213
>AE014296-744|AAF47827.2| 505|Drosophila melanogaster CG11593-PA
protein.
Length = 505
Score = 33.1 bits (72), Expect = 0.41
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Frame = +3
Query: 345 QSIPKEHKLDVSNVNTQSLGV---FSHIAPTNTDSVVPETENLYMEGRIVQKLECRPNDD 515
+S P E K+D+S T S GV + PT + + + E + ++LE +
Sbjct: 30 ESSPSESKMDISETPTDSTGVSPLADDVLPTAPEKNILKLEQA-KQDHDKEELEFKTTSA 88
Query: 516 VTYYKLKSESIKKASMPQRQVQQLDRIVQNFKPVSDHPHNID 641
+ L+ E + +MPQR ++R + N P+ P N D
Sbjct: 89 LDNRILRPELLPMEAMPQRH-NIIERTLANSHPLMS-PTNTD 128
>X98082-1|CAA66706.1| 1332|Drosophila melanogaster RADHA protein
protein.
Length = 1332
Score = 28.7 bits (61), Expect = 8.8
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +3
Query: 435 DSVVPETENLYMEG-RIVQKLECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQNFK 611
D+V + E L E + V+K R V K++ K + V+ I + K
Sbjct: 982 DTVAQDYETLEEETIKPVKKKIVRKKSSVILEKIEDTENKGPADEVVSVEAKKIIKKKAK 1041
Query: 612 PVSDHPHNIDYQERKKAEGKKARDDKEAVLNM 707
P D+P +Y + KK E +K + + M
Sbjct: 1042 PACDNPTVEEYPKTKKGESRKLKSTSKEHFTM 1073
>X98081-2|CAA66705.1| 1332|Drosophila melanogaster RADHA protein
protein.
Length = 1332
Score = 28.7 bits (61), Expect = 8.8
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +3
Query: 435 DSVVPETENLYMEG-RIVQKLECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQNFK 611
D+V + E L E + V+K R V K++ K + V+ I + K
Sbjct: 982 DTVAQDYETLEEETIKPVKKKIVRKKSSVILEKIEDTENKGPADEVVSVEAKKIIKKKAK 1041
Query: 612 PVSDHPHNIDYQERKKAEGKKARDDKEAVLNM 707
P D+P +Y + KK E +K + + M
Sbjct: 1042 PACDNPTVEEYPKTKKGESRKLKSTSKEHFTM 1073
>AF293971-1|AAG53639.1| 1673|Drosophila melanogaster Lilliputian
protein.
Length = 1673
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 564 PQRQVQQLDRIVQNFKPVSDHPHNI-DYQERKKAEGKK 674
PQ+Q QQLD++ Q + +N+ +Y+ RK+ E +K
Sbjct: 36 PQQQQQQLDQLQQYNNNLYSQNYNMEEYERRKRREREK 73
>AF289034-1|AAK18163.1| 1673|Drosophila melanogaster lilliputian
protein.
Length = 1673
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 564 PQRQVQQLDRIVQNFKPVSDHPHNI-DYQERKKAEGKK 674
PQ+Q QQLD++ Q + +N+ +Y+ RK+ E +K
Sbjct: 36 PQQQQQQLDQLQQYNNNLYSQNYNMEEYERRKRREREK 73
>AE014297-3789|AAF56461.1| 1332|Drosophila melanogaster CG11908-PA
protein.
Length = 1332
Score = 28.7 bits (61), Expect = 8.8
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +3
Query: 435 DSVVPETENLYMEG-RIVQKLECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQNFK 611
D+V + E L E + V+K R V K++ K + V+ I + K
Sbjct: 982 DTVAQDYETLEEETIKPVKKKIVRKKSSVILEKIEDTENKGPADEVVSVEAKKIIKKKAK 1041
Query: 612 PVSDHPHNIDYQERKKAEGKKARDDKEAVLNM 707
P D+P +Y + KK E +K + + M
Sbjct: 1042 PACDNPTVEEYPKTKKGESRKLKSTSKEHFTM 1073
>AE014134-513|AAN10400.1| 1673|Drosophila melanogaster CG8817-PC,
isoform C protein.
Length = 1673
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 564 PQRQVQQLDRIVQNFKPVSDHPHNI-DYQERKKAEGKK 674
PQ+Q QQLD++ Q + +N+ +Y+ RK+ E +K
Sbjct: 36 PQQQQQQLDQLQQYNNNLYSQNYNMEEYERRKRREREK 73
>AE014134-512|AAN10399.1| 1673|Drosophila melanogaster CG8817-PB,
isoform B protein.
Length = 1673
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 564 PQRQVQQLDRIVQNFKPVSDHPHNI-DYQERKKAEGKK 674
PQ+Q QQLD++ Q + +N+ +Y+ RK+ E +K
Sbjct: 36 PQQQQQQLDQLQQYNNNLYSQNYNMEEYERRKRREREK 73
>AE014134-511|AAF51180.2| 1673|Drosophila melanogaster CG8817-PA,
isoform A protein.
Length = 1673
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 564 PQRQVQQLDRIVQNFKPVSDHPHNI-DYQERKKAEGKK 674
PQ+Q QQLD++ Q + +N+ +Y+ RK+ E +K
Sbjct: 36 PQQQQQQLDQLQQYNNNLYSQNYNMEEYERRKRREREK 73
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,399,401
Number of Sequences: 53049
Number of extensions: 634486
Number of successful extensions: 1460
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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