Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_P18
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    28   1.5  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    27   2.0  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    27   2.7  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    27   3.6  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    27   3.6  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   3.6  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    26   6.2  

>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 205 TDMLELKNAYYITLMFKIYKKFENVIQLXFQNLSLKLV 92
           TD+L+   AY   +  KI ++++N++Q  F +L  K V
Sbjct: 365 TDLLKKAFAYTSEVFEKIVEEYKNIVQNDFYDLMFKRV 402


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = +3

Query: 231 FVRSTISFKANPKNFARLPQQKIGSVPCAVGFSLFTWLGFY 353
           + R  I     P   ARLP   IGS     G     W G+Y
Sbjct: 433 YFRQVIKAGNKPAPEARLPPMMIGSFLFPAGIFWLAWSGYY 473


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 276 ARLPQQKIGSVPCAVGFSLFTWLGFY 353
           ARLP   IGSV    G     W G+Y
Sbjct: 406 ARLPPMMIGSVLFPAGIFWLAWSGYY 431


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +3

Query: 231 FVRSTISFKANPKNFARLPQQKIGSVPCAVGFSLFTWLGFY 353
           + R  ++    P   ARLP   IG      G    +W G+Y
Sbjct: 429 YYRRCLALGGKPDPEARLPPMMIGCFMFPAGIFWLSWSGYY 469


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 255 KANPKNFARLPQQKIGSVPCAVGFSLFTWLGFY 353
           K  P   ARLP   IG +   +G     W G Y
Sbjct: 377 KGRPVPEARLPSMMIGCIVFPIGIFWLAWTGNY 409


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/86 (22%), Positives = 35/86 (40%)
 Frame = +3

Query: 423 DYIKAEQLLHVALRQAQQMQHQLAITYIYDVMANLALEREHLDKAKDLFVAVTQRIMADG 602
           D  K E+ L  + RQA+++   +  T +Y       ++RE  D       A    I  D 
Sbjct: 713 DRAKKEEELRESRRQARKLDFLITQTELYSHFVGRKMDREQ-DLPSATNTASVSEINFDS 771

Query: 603 ATEDDFRVVHISTKLARISHLKKDYQ 680
             E+D R + + +    +   ++  Q
Sbjct: 772 DEEEDIRRLAVESAQEAVQKAREHSQ 797


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 343 SHVNNENPTAHGTLPIFC*GSLAKFFGLALKLIVDLTKRTNKFLYLT 203
           S  +NE  T HG    F    ++ +   +LK I +LT  TN+ LYL+
Sbjct: 344 SKTSNEIVTTHG----FAKNQVSLWKYPSLKNIANLTAHTNRVLYLS 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,051
Number of Sequences: 5004
Number of extensions: 53833
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)