Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_P18
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437...    31   1.2  
03_06_0643 + 35248597-35250585,35250663-35250773,35250867-352509...    28   6.5  
02_01_0252 - 1657268-1657692,1657727-1658445,1658761-1659089,165...    28   8.6  

>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
            4378900-4378970,4379038-4379144,4379241-4379711,
            4379791-4379976,4380132-4380425,4380820-4381434,
            4382219-4382615,4382768-4382850,4383397-4383567,
            4384046-4384243,4384754-4385314,4385401-4385460,
            4385553-4385869,4385980-4386403,4386539-4387006,
            4387093-4387209,4387306-4387427,4387506-4388247,
            4388453-4388485,4388625-4388879,4388975-4389160,
            4390115-4390453,4391293-4392045
          Length = 3017

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 336  TWLGFYKKTSAEDELIHTIKHCILFIQRYDYIKAEQLLHVALRQAQQMQHQLAI 497
            +WL  Y K    DEL+  + H +   +    I A Q  H A  +A  +  Q+ I
Sbjct: 2792 SWLSRYDKERRNDELLEAMHHLVEMAEVLSTIDAGQRTHRACARASLLSLQIRI 2845


>03_06_0643 +
           35248597-35250585,35250663-35250773,35250867-35250971,
           35252215-35252304
          Length = 764

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 411 IQRYDYIKAEQLLHVALRQAQQMQHQLAITYIYDVMANL 527
           I+RYDY+  + L  V +  +   +HQ A+  I D+   L
Sbjct: 563 IERYDYVSLQCLRLVEIGASSDEKHQHALKLIRDIRRTL 601


>02_01_0252 -
           1657268-1657692,1657727-1658445,1658761-1659089,
           1659223-1659375,1659430-1659561,1659748-1659852,
           1660020-1660193,1660283-1660352,1660458-1660639,
           1660738-1660847,1660948-1661052,1661153-1661231,
           1662128-1662168,1662283-1662358,1662455-1662589
          Length = 944

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/69 (23%), Positives = 36/69 (52%)
 Frame = +1

Query: 421 MTTLKQNNYCMWLLDKPNRCSIS*Q*PIFMMLWQTWHLKENT*IRLKTFLLLSLKESWLM 600
           +T ++ +N   WL D  +R S S +  + ++LW+ W ++ N  +  KT   +   + +L 
Sbjct: 692 LTDVRMDNKA-WLFDLLDRLSESERAALLLVLWRNWFVR-NEIVHEKTPPTIESSKRFLE 749

Query: 601 VQLKMIFEL 627
             ++ +F +
Sbjct: 750 SYIQSLFNI 758


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,854,228
Number of Sequences: 37544
Number of extensions: 292528
Number of successful extensions: 606
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)