Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_P18
(719 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL034488-8|CAE46690.1| 395|Caenorhabditis elegans Hypothetical ... 69 3e-12
AL034488-7|CAA22452.1| 396|Caenorhabditis elegans Hypothetical ... 69 3e-12
U34661-1|AAA92006.1| 962|Caenorhabditis elegans ionotropic glut... 33 0.27
L16559-2|AAA27933.3| 962|Caenorhabditis elegans Glutamate recep... 33 0.27
Z78059-1|CAH04725.2| 348|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z81104-10|CAB03214.1| 293|Caenorhabditis elegans Hypothetical p... 28 5.8
AL033510-11|CAA22071.1| 293|Caenorhabditis elegans Hypothetical... 28 5.8
>AL034488-8|CAE46690.1| 395|Caenorhabditis elegans Hypothetical
protein Y54G11A.8b protein.
Length = 395
Score = 69.3 bits (162), Expect = 3e-12
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Frame = +3
Query: 342 LGFYKKTSAEDELIHTIKHCILFIQRYDYIKAEQLLHVALRQAQQMQHQLAITYIYDVMA 521
LG K D L +K L+ +R Y A Q+L +AL +A++ + + IT +YD MA
Sbjct: 80 LGIEKVQLDADPLKEKVKQSWLYRKRRQYDDAIQVLQLALEEAEERKEDMPITRVYDEMA 139
Query: 522 NLALEREHLDKAKDLFVAVTQR-IMADGATEDDFRVVHISTKLARISHLKKDYQTAQMGY 698
N E+ +LD+A F V QR + G + D + +S KLA I + D ++A+ G+
Sbjct: 140 NTFYEKMNLDEADKYFRIVIQRLVQLHGKKDFDPEFIGVSLKLADILAHRGDLESAESGF 199
Query: 699 EWCLXK 716
+ C+ +
Sbjct: 200 KHCVRR 205
>AL034488-7|CAA22452.1| 396|Caenorhabditis elegans Hypothetical
protein Y54G11A.8a protein.
Length = 396
Score = 69.3 bits (162), Expect = 3e-12
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Frame = +3
Query: 342 LGFYKKTSAEDELIHTIKHCILFIQRYDYIKAEQLLHVALRQAQQMQHQLAITYIYDVMA 521
LG K D L +K L+ +R Y A Q+L +AL +A++ + + IT +YD MA
Sbjct: 81 LGIEKVQLDADPLKEKVKQSWLYRKRRQYDDAIQVLQLALEEAEERKEDMPITRVYDEMA 140
Query: 522 NLALEREHLDKAKDLFVAVTQR-IMADGATEDDFRVVHISTKLARISHLKKDYQTAQMGY 698
N E+ +LD+A F V QR + G + D + +S KLA I + D ++A+ G+
Sbjct: 141 NTFYEKMNLDEADKYFRIVIQRLVQLHGKKDFDPEFIGVSLKLADILAHRGDLESAESGF 200
Query: 699 EWCLXK 716
+ C+ +
Sbjct: 201 KHCVRR 206
>U34661-1|AAA92006.1| 962|Caenorhabditis elegans ionotropic
glutamate receptor subunitprotein.
Length = 962
Score = 32.7 bits (71), Expect = 0.27
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Frame = +3
Query: 183 FFSSNMSVRYRNLFVRFVRSTISFKANPKNFARLPQQKIGSVPCAVGFS--LFTWLGFYK 356
F + N+++ N+ + R S K + K + L SV AVG L TW GF K
Sbjct: 269 FQNGNINISGFNIINKDGREYWSLKKHLKTSSSLGGGDDVSVEAAVGHDAMLVTWHGFAK 328
Query: 357 KTSAEDELIH-TIKHCILFIQRYDYIKAEQL 446
A D L H T +H F + + I + L
Sbjct: 329 CLQANDSLFHGTFRHRRFFNRGFPGIYCDPL 359
>L16559-2|AAA27933.3| 962|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 1 protein.
Length = 962
Score = 32.7 bits (71), Expect = 0.27
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Frame = +3
Query: 183 FFSSNMSVRYRNLFVRFVRSTISFKANPKNFARLPQQKIGSVPCAVGFS--LFTWLGFYK 356
F + N+++ N+ + R S K + K + L SV AVG L TW GF K
Sbjct: 269 FQNGNINISGFNIINKDGREYWSLKKHLKTSSSLGGGDDVSVEAAVGHDAMLVTWHGFAK 328
Query: 357 KTSAEDELIH-TIKHCILFIQRYDYIKAEQL 446
A D L H T +H F + + I + L
Sbjct: 329 CLQANDSLFHGTFRHRRFFNRGFPGIYCDPL 359
>Z78059-1|CAH04725.2| 348|Caenorhabditis elegans Hypothetical
protein C34B4.5 protein.
Length = 348
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -2
Query: 262 LALKLIVDLTKRTNKFLYLTDMLELKNAYYITLMFKIYKKFENVIQLXFQNLSLKLV 92
L + L++ + K T+++ LK A++I LMF+IY N+I L + L + V
Sbjct: 236 LYIALVIKIIKMKKTSRNKTEIIILKQAFFIFLMFQIY----NIIVLYGKTLKMTTV 288
>Z81104-10|CAB03214.1| 293|Caenorhabditis elegans Hypothetical
protein Y40H7A.8 protein.
Length = 293
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 497 YC*LMLHLLGLSKSHMQ*LFCFNVVIPLYEENTMFNGMYKFIFSTCF 357
Y L+ L+ K H ++ L EE+ MFNG Y F+F T +
Sbjct: 132 YSYLVTKLIRFQKIHFDYGIQRFLIEDLPEEDKMFNGSYLFLFFTSY 178
>AL033510-11|CAA22071.1| 293|Caenorhabditis elegans Hypothetical
protein Y40H7A.8 protein.
Length = 293
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 497 YC*LMLHLLGLSKSHMQ*LFCFNVVIPLYEENTMFNGMYKFIFSTCF 357
Y L+ L+ K H ++ L EE+ MFNG Y F+F T +
Sbjct: 132 YSYLVTKLIRFQKIHFDYGIQRFLIEDLPEEDKMFNGSYLFLFFTSY 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,676,770
Number of Sequences: 27780
Number of extensions: 299775
Number of successful extensions: 702
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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