Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_P17
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.2  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   2.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   2.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   2.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   2.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   2.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   2.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   2.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 551 WFDYGFIPSYLYKISI 504
           WFDY FIP  L  + I
Sbjct: 563 WFDYAFIPGNLKWLDI 578


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 408 NHQRSLQKGHYCSSFHLSSNSLRRNDRT 325
           N ++S  +   C  + +SSNSLR   R+
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRS 223


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 408 NHQRSLQKGHYCSSFHLSSNSLRRNDRT 325
           N ++S  +   C  + +SSNSLR   R+
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRS 223


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 408 NHQRSLQKGHYCSSFHLSSNSLRRNDRT 325
           N ++S  +   C  + +SSNSLR   R+
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRS 223


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 408 NHQRSLQKGHYCSSFHLSSNSLRRNDRT 325
           N ++S  +   C  + +SSNSLR   R+
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRS 223


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 408 NHQRSLQKGHYCSSFHLSSNSLRRNDRT 325
           N ++S  +   C  + +SSNSLR   R+
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRS 223


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 408 NHQRSLQKGHYCSSFHLSSNSLRRNDRT 325
           N ++S  +   C  + +SSNSLR   R+
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRS 223


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 408 NHQRSLQKGHYCSSFHLSSNSLRRNDRT 325
           N ++S  +   C  + +SSNSLR   R+
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRS 223


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 609 PGRFXMMQQTVCDECPNVKFVNE 677
           PG    +++  C ECP  KF +E
Sbjct: 251 PGYQADVEKQECTECPIGKFKHE 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,703
Number of Sequences: 438
Number of extensions: 3145
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)