Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_P16
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    28   1.6  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   2.7  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   4.8  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   6.3  
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    25   8.3  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   8.3  

>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 432 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKPXATDAEGSADSAAII 608
           K S+ P+ +  +    KVEEP+ + ++   + + TV +  +E+ P        A S    
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTF 505

Query: 609 PNMVKK 626
              VKK
Sbjct: 506 SEDVKK 511


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 429 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPXATDAEGSADSA 599
           AK S   D   K +  K  + A+ PE SK  V+       KEE    +++E S+  +
Sbjct: 41  AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 368 VFWGYIVLFGLWYSGYLVVTNW 303
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 456 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPXATDAEGSAD 593
           ++K  + KVEE  ++  D K +   ++    KEEK   TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +3

Query: 531 TVAEISKEEKPXATDAEGSADSAAII----PNMVKKIDLAPNVXSD 656
           TVA+I KEE P  T      DSAA++    P  +  + L  N+  D
Sbjct: 204 TVAKIFKEEYPHLTLKNQLIDSAAMLLVKSPRTLNGVVLTDNLFGD 249


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 438 SEIPDAEAKSADIKVEEPAA-QPEDSKTEVQATVAEISKEEKPXATDAEGSA 590
           S IP  E    +I VEE    +P     EV+ T A   +E+ P   D+E +A
Sbjct: 142 SPIPSPETIHKNIDVEEKETIEPTTPVKEVETT-AHAEEEKGPLTPDSEYAA 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,658
Number of Sequences: 5004
Number of extensions: 35549
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)