Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_P09
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 242 3e-65
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 242 3e-65
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 31 0.14
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 28 1.3
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 26 4.0
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 5.2
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 26 5.2
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 9.1
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 242 bits (593), Expect = 3e-65
Identities = 108/164 (65%), Positives = 142/164 (86%)
Frame = +3
Query: 123 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 302
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 303 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 482
+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A+ MR +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 483 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 614
+A+ LSG+VKEILGTA SVGCTV+G+ PHD+ +I++G + I +
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQ 164
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 242 bits (593), Expect = 3e-65
Identities = 108/164 (65%), Positives = 142/164 (86%)
Frame = +3
Query: 123 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 302
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 303 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 482
+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A+ MR +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 483 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 614
+A+ LSG+VKEILGTA SVGCTV+G+ PHD+ +I++G + I +
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQ 164
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 31.1 bits (67), Expect = 0.14
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -1
Query: 613 SSMVKAPLLMSSIRSCGGLPSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAIPI-TSSR 437
S++ + +LM S LPS + P V R+ ++PE DLFL I A+ + TSS+
Sbjct: 1447 SNICRITILMLSSPRDFFLPS-LPPLIDLVKRLITSDPEGVLKKDLFLFIRALALRTSSK 1505
Query: 436 EMLPL 422
+LPL
Sbjct: 1506 HLLPL 1510
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/76 (23%), Positives = 32/76 (42%)
Frame = +3
Query: 291 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIM 470
K + Q ++ N + V ++ L LKE +D++K ++ S + A+
Sbjct: 23 KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82
Query: 471 RNRSMARYLSGSVKEI 518
RNR L +V I
Sbjct: 83 RNRKARENLKVNVSSI 98
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 404 LFTITRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHS 297
+FT+ R LK + CR N + GLS C +S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -1
Query: 556 PSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAIPITSSREMLPLCLIF 410
P+ +P + PR T +R + + + P TSSR LPL +++
Sbjct: 213 PTESNPMFLSTPRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMY 261
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = -3
Query: 623 KHLFINGQSSAVDVINKIMWRPALHSTS 540
K ++++ ++ A+D++NK M A+ STS
Sbjct: 168 KTIYVSSETEALDILNKGMGSRAVASTS 195
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 202 DDVAPTSPPTHRKFTILI 149
D++A T PP HRK IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,787
Number of Sequences: 5004
Number of extensions: 53483
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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