Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_P09
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              28   0.087
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.6  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   7.6  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 27.9 bits (59), Expect = 0.087
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 507 VKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE*MFLISI 635
           +K  L T QSV C  E      +IDDIN G + +D+   L+ I
Sbjct: 22  LKSGLHTVQSV-CMKEIGTAQQIIDDINEGKINMDDENVLLFI 63


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 108 SSTLYYNNVKSKWMSLDSXKGYRLNVQ 28
           SS +  NNVK   +S+D     RLN +
Sbjct: 109 SSAITGNNVKDVLVSIDPSGMVRLNTR 135


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 402 KQKNIKHNGNISLEDVIGIAKIMRNRSMARYLS 500
           K+K I +   +++ D  G+  +  NR+   YL+
Sbjct: 131 KKKGINNGIIVNINDASGLNLLPMNRNRPAYLA 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,744
Number of Sequences: 438
Number of extensions: 3965
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)