Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_P07
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 30 0.22
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 27 2.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.1
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 27 2.1
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 26 4.8
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 26 4.8
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 6.3
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 8.3
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc... 25 8.3
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 30.3 bits (65), Expect = 0.22
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 99 SVIIIKMYCASDKNVPGVSSSQSSKNVKDGVTMREKRGGAMSKMQKLRKRLSL-SFGRLS 275
+VI++ + D NV ++SS N D V M+EKR ++ M RK+L L S LS
Sbjct: 185 AVIVVSDSESDDNNV----RTKSSLNDHDKVNMKEKRNLELAFMNSKRKKLELPSLPVLS 240
Query: 276 TKDES 290
T S
Sbjct: 241 TAGPS 245
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 122 VHFNYYHTFVAEQWFSSNKITHIIFEI 42
+ FN Y TFV E+ + NK T IF I
Sbjct: 173 IPFNLYSTFVIEEKYGFNKSTLKIFVI 199
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.1
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +1
Query: 283 TSRTATTANVGGDSRTAGPGGSSLTMDTLKSVSIDWSLTEIYLMIRTPITSGAKVA---T 453
TS ++ ++ + +A P SSLT + S S+ S T + + ITS + + T
Sbjct: 86 TSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSIT 145
Query: 454 VNTVSEDSCQSLQIRSSXT 510
++++ S S + SS T
Sbjct: 146 SSSLASSSTTSSSLASSST 164
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 297 DNGECRGRQQNGGARGKLSYNGYSEECLDRLEPNGNIPNDKDSHY 431
D R R+ +LS N SE LD+ GN+ N K+ Y
Sbjct: 31 DTPRTRVRKMLASVDMQLSSNAVSEASLDKESTVGNLENQKNRSY 75
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.8 bits (54), Expect = 4.8
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 135 KNVPGVSSSQSSKNVKDGVTMREKRGGAMSKMQKLRKRLSLSFGRLSTKDESDGDNGE 308
K V +S KN K+G +EK G SK KL K + + K E + + E
Sbjct: 514 KEETSVKNSPKGKNTKNGKAEKEK-PGKKSKAPKLSKAEQIRAEIAARKVEKEENKNE 570
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 156 SSQSSKNVKDGVTMREKRGGAMSKMQKLRKRLSLSFGRLSTKDES 290
S Q K++ DGV+ R + A +K QKL K+ +F +L+ E+
Sbjct: 519 SKQYLKSIVDGVSSRLEEVFAFAKDQKLVKKSIDNFLQLTVNFEN 563
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 6.3
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = +3
Query: 96 KSVIIIKMYCASDKN--VPGVSSSQSSKNVKDGVTMREKRGGAMSKMQKLRKRLS-LSFG 266
KS + I + A+D P +SS ++N+ G + S QKL +RLS LS
Sbjct: 584 KSSVKIVVDNANDDTDQAPTTNSSSLNENLLGGHASENDKSLKQSPFQKLTRRLSDLSVN 643
Query: 267 RLSTKDESDGDN 302
+ D DN
Sbjct: 644 SSGQISKQDFDN 655
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +1
Query: 283 TSRTATTANVGGDSRTAGPGGSSLTMDTLKSVSIDW--SLTEIYLMIRTPITSGAKVATV 456
+S TAT+ + + + P +S T + S S D+ SL + + + I+S + + +
Sbjct: 568 SSLTATSTSTPALTHSITPSNTSYTSSLIPSSSTDYSSSLITVCSNVTSEISSTSLASLI 627
Query: 457 NTVSEDSCQS 486
+T++ S
Sbjct: 628 STLTSQQISS 637
>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 148
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 219 MSKMQKLRKRLSLSFGRLSTKDESDGDNGECRGRQ 323
+SK +KLR +S GR+ + G G+ G Q
Sbjct: 5 VSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQ 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,310
Number of Sequences: 5004
Number of extensions: 47910
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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