Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_P07
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0194 + 15645571-15645978 34 0.074
09_06_0363 - 22551848-22552915 31 0.52
06_03_0188 - 17691582-17692241 31 0.92
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 30 1.2
11_01_0772 - 6455042-6458107 30 1.6
10_02_0147 - 5855100-5855105,5855176-5855808 30 1.6
01_05_0612 - 23652121-23652400,23653031-23654427 30 1.6
04_04_1226 - 31872413-31873036 29 2.1
06_03_0287 - 19168685-19168735,19168847-19168884,19169517-191697... 29 2.8
08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,622... 29 3.7
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042... 28 4.9
04_01_0360 - 4720997-4721812 28 4.9
01_01_0518 - 3810290-3810397,3810469-3810851,3810949-3811069 28 4.9
12_01_0992 + 10067834-10068133 28 6.5
11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009 28 6.5
04_04_0429 - 25150266-25150916 28 6.5
01_05_0335 + 21074117-21074241,21074299-21074929,21075359-210753... 28 6.5
01_04_0139 - 16570515-16571141 28 6.5
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982... 27 8.5
02_01_0588 + 4350971-4351514,4351639-4351703 27 8.5
>10_08_0194 + 15645571-15645978
Length = 135
Score = 34.3 bits (75), Expect = 0.074
Identities = 24/98 (24%), Positives = 44/98 (44%)
Frame = +3
Query: 198 REKRGGAMSKMQKLRKRLSLSFGRLSTKDESDGDNGECRGRQQNGGARGKLSYNGYSEEC 377
+++R +++ Q+LR+R G+ + + GE +G ++GG G+ +G S C
Sbjct: 21 KQRRLETVTRRQRLRRRRQWRDGKAEARVGEETAEGEGKGEGESGGREGRGETDGGSSAC 80
Query: 378 LDRLEPNGNIPNDKDSHYEWSEGGNGEYRVRRQLSVSS 491
D D ++ G R RRQ SV++
Sbjct: 81 -DGNGGRRRWQRDGEAAAARGNGDGVRGRRRRQCSVAA 117
>09_06_0363 - 22551848-22552915
Length = 355
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 229 CKSFESACP*ASEGYQRKTSRTATTANVGGDSRTAGPGGSSLTMDTLKSVS 381
CKS A P +S + + S +ATT++ SR GP SS++ T + S
Sbjct: 2 CKSRSDAVPVSSVASRSRRS-SATTSSSSSSSRRPGPASSSISGSTASAAS 51
>06_03_0188 - 17691582-17692241
Length = 219
Score = 30.7 bits (66), Expect = 0.92
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 475 CLRTRYSPLPPSLHS*WESLSLGIFPLGSSRSRHSSE 365
C + +P PPS HS W LSL + +RSR ++
Sbjct: 169 CQQWHTTPRPPSAHSAWSLLSLRRYEREETRSRRRNQ 205
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +3
Query: 312 RGRQQNGGARGKLSYNGYSEECLDRLEPNGNIPNDKDSHYEWSEGGNGEYR 464
RG N G +YNG + NGN + Y+ GNG+Y+
Sbjct: 72 RGYSNNNGGYQNYNYNGNNSNGYQNYNYNGNGQGHYNGGYQPIHQGNGQYQ 122
>11_01_0772 - 6455042-6458107
Length = 1021
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 203 LSHCHAIFDVFRRLRRRYPGNIFIT-STVHFNYYHTFV 93
LS CH D F RL + P +++ + VH N HT V
Sbjct: 890 LSRCHLGHDAFERLEKCVPNLTYLSLNKVHTNGAHTLV 927
>10_02_0147 - 5855100-5855105,5855176-5855808
Length = 212
Score = 29.9 bits (64), Expect = 1.6
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Frame = +3
Query: 93 HKSVIIIKMYCASDKNVPGVSSSQSS--KNVKDGVTMREKRGGAMSKMQKLRKRLSLSFG 266
HK ++ K NVPG SS+ K DG +G A G
Sbjct: 70 HKGTLVQKYKVKVIANVPGTGSSKDGEVKQAPDGAAQSSNKGAADGSRGDQDDGSQGVQG 129
Query: 267 RLSTKDESDGDNG-ECRGRQQNGGARGKLSYNGYSEE 374
S + DG G + G QNG +L +N + ++
Sbjct: 130 VGSQGTQGDGVQGFQGEGLNQNGNTT-QLQFNNFQDQ 165
>01_05_0612 - 23652121-23652400,23653031-23654427
Length = 558
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/75 (21%), Positives = 37/75 (49%)
Frame = +3
Query: 126 ASDKNVPGVSSSQSSKNVKDGVTMREKRGGAMSKMQKLRKRLSLSFGRLSTKDESDGDNG 305
+ D N+ ++ ++ + + DG+T+ A + +L L + R +T +SD D+
Sbjct: 44 SGDDNLGAITVAKGTTSTGDGITVAFS-AAAPPAISRLLFALHPNKNRQTTDSDSDSDSS 102
Query: 306 ECRGRQQNGGARGKL 350
+ + + ARG++
Sbjct: 103 DSDSDESDSSARGRV 117
>04_04_1226 - 31872413-31873036
Length = 207
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Frame = +3
Query: 135 KNVPGVSSSQSSKNVK-DGVTMREKRGGAMSKMQKLRK-RLSLSFGRLSTKDESDGDNGE 308
++VP + S++ S N++ DG+ + K GG++ L K LS + S +S+
Sbjct: 47 QSVPPLHSTEDSSNIQQDGIQINHKSGGSVGPSANLVKTSLSQASTYTSASLQSNSVKDG 106
Query: 309 CRGRQQNGGARGKL-SYNGYSEECLDRLEPNGNIPNDKD 422
G+ G K+ ++ + + D L G IP++ D
Sbjct: 107 IVGKYFVGKMSNKVPGFSLITVKVKDNLVLKGWIPDESD 145
>06_03_0287 -
19168685-19168735,19168847-19168884,19169517-19169727,
19171461-19171643,19171879-19172028,19172161-19172256,
19172378-19172464,19172535-19172741,19172823-19173047,
19173150-19173261,19173397-19173453,19175522-19176882
Length = 925
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +3
Query: 264 GRLSTKDESDGDNGECRGRQQNGGARGKLSYNGYSEECLDRLE 392
GR S D+ +G G RGR+ GG +S G LD E
Sbjct: 247 GRYSDLDDDEGGFGSLRGRRGRGGRMSGVSRRGGRGSDLDDSE 289
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 198 REKRGGAMSKMQKLRKRLSLSFGRLSTKDESDGDNGECRGRQQNGGARGK 347
R RGG MS + + R S L ++ + D+ + RGR+++ G RG+
Sbjct: 302 RRGRGGRMSGVSRKGGRGS----DLDDSEDDENDSIDSRGRRRDHGTRGR 347
>08_01_0704 +
6219530-6219609,6221595-6222243,6222339-6222437,
6222521-6222616,6222750-6222848,6222929-6223027,
6223811-6223882,6224508-6224597,6225173-6227329
Length = 1146
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +3
Query: 147 GVSSSQSSKNVKDGVTMREKRGG-AMSKMQKLRKRLSLSFGRLSTKDESDGDNGECRGRQ 323
G S+ S+ V+ + + K G + ++ +R+ + + + S S +G R +
Sbjct: 185 GSYSATPSRFVRGNIIVGSKEGSCSRTRSGLVRESIQMDYSDSSC---SRTRSGLVRRKP 241
Query: 324 QNGGARGKLSYNGYSEECLDRLEPNGNIPNDKDSHYEWSE 443
+ + + NG S++CL P N PN K + E S+
Sbjct: 242 FMVQVKDEAAMNGLSDDCLKEDSPGKNEPNHKSNLVENSD 281
>04_04_1657 - 35102751-35102868,35102987-35103504,35104065-35104211,
35104289-35106262,35106964-35107089,35107178-35107264,
35107335-35107424,35107725-35107811,35108248-35108300,
35109339-35109387
Length = 1082
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 354 YNGYSEECLDRLEPNGNIPNDKDSHYEWSEGGNGEYRVRRQLS 482
+NG+ + EPNGN DS +E + G E+ V +Q++
Sbjct: 930 FNGFLAQAHQISEPNGNTMVPHDSRHE-NNGNTKEFPVAQQMT 971
>04_01_0360 - 4720997-4721812
Length = 271
Score = 28.3 bits (60), Expect = 4.9
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Frame = +3
Query: 198 REKRGGAMSKMQKLRKRLSLSFGRLSTKDESDGDNGECRGRQQNGGARGKLSYNGYSEEC 377
+++R +++ Q+LR+R G+ + + GE +G ++GG G +G S
Sbjct: 106 KQRRLETVTRRQRLRRRRQWREGKAEARVGEETVEGEGKGEGESGGREGGGETDGGS-SA 164
Query: 378 LDRLEPNGNIPNDKDSHYEWSEGGNGE---YRVRRQLSVSS 491
D D ++ E + G+G+ R RRQ SV++
Sbjct: 165 GDGDGGRRRRQRDGEAGVEAAARGDGDGLRGRRRRQCSVAA 205
>01_01_0518 - 3810290-3810397,3810469-3810851,3810949-3811069
Length = 203
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = +3
Query: 153 SSSQSSKNVKDGVTMREKRGGAMSKMQKLRKRLSLSFGRLSTKDESDGDN--GECRGRQQ 326
SS +SS + + + K GG + +++R+ + G S + D G+ G+QQ
Sbjct: 24 SSERSSSSAPNNL----KEGGGVESDEEIRRVPEMGGGGGSASSGAGADERQGKEDGKQQ 79
Query: 327 NGGARGKLSYNGYSEECLDRLEPNGNIPNDKDSH 428
GG G + G E+ G DK+ +
Sbjct: 80 GGGGGGAAAAGGGQEQA-PPARKRGRSAGDKEQN 112
>12_01_0992 + 10067834-10068133
Length = 99
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +3
Query: 180 KDGVTMREKRGGAMSKMQKLRKRLSLSFGRLSTKDESDGD 299
++G +R +RGG ++++ RKR S G ++ + +G+
Sbjct: 28 EEGGGVRPQRGGGRGEVEEERKRCSTMAGEVALRQRRNGE 67
>11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009
Length = 431
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = +3
Query: 156 SSQSSKNVKDGVTMREKRGGAMSKMQKLRKRLSLSFGRL-STKDESDGDNGECRGRQQNG 332
SS SS + K GG K + R G + STK+ S G R R+ G
Sbjct: 29 SSSSSSRSQPVSAAEGKNGGKKEKRRSSISRSITCAGSICSTKESSVSSRGRGRRRRSGG 88
Query: 333 GARG 344
G G
Sbjct: 89 GGGG 92
>04_04_0429 - 25150266-25150916
Length = 216
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -1
Query: 586 PRNASLLGLGGRFGLMTTRASSLAPSXRSFESEETDNCLRTRYSPLPPS 440
P+ + +GGR R L SF + C R +SP PPS
Sbjct: 97 PKRRARAAIGGRSSRSRRRRLRLRREDGSFLNLHETGCARLDFSPPPPS 145
>01_05_0335 +
21074117-21074241,21074299-21074929,21075359-21075399,
21078458-21078560,21078755-21079601,21079938-21080689,
21080712-21080970,21081011-21081354
Length = 1033
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 171 KNVKDGVTMREKRGGAMSKMQKLRKRLSLSFGRLST 278
K + DGV M +KRGG + K+ + ++ GR S+
Sbjct: 172 KKIHDGVEMEKKRGGKIGKL--MSSNVTYGMGRPSS 205
>01_04_0139 - 16570515-16571141
Length = 208
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +3
Query: 198 REKRGGAMSKMQKLRKRLSLSFGRLSTKDESDGDNGECRGRQQNGGARG 344
+++R +++ Q+LR+R G+ + + GE +G ++GG G
Sbjct: 21 KQRRLETVTRRQRLRRRRQWREGKAEARVGEETAEGEGKGEGESGGREG 69
>03_02_0609 -
9823120-9823573,9823903-9824102,9824240-9824335,
9824454-9824567,9824711-9824774,9825206-9825312
Length = 344
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +3
Query: 240 RKRLSLSFGRLSTKDESDGDNGECRGRQQNGGARGKLSYNGYSEECLDRLEPNGNIPNDK 419
R+ SLS+ R + S NG+ R NG + + S D E NG+ P +
Sbjct: 214 RRSRSLSYSRSPRRSISPAANGKERNPSPNGRRSPRSPQDRVSPPPKDNDERNGDSPWGR 273
Query: 420 DSHYEWSEG 446
++ S+G
Sbjct: 274 ENSRSPSDG 282
>02_01_0588 + 4350971-4351514,4351639-4351703
Length = 202
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 254 GQALSKLLHFAHSAAPFLSHCHAIFDVFRRLRR 156
G+ ++ + H A ++ H HA DV RR+ R
Sbjct: 135 GELIADEISLLHEAMDYVVHLHAQVDVLRRVSR 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,815,605
Number of Sequences: 37544
Number of extensions: 363618
Number of successful extensions: 1329
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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