Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_P06
         (443 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3ZQL2 Cluster: Putative uncharacterized protein; n=1; ...    33   2.8  
UniRef50_A7SM04 Cluster: Predicted protein; n=1; Nematostella ve...    33   2.8  
UniRef50_A6GI22 Cluster: Uroporphyrinogen III synthase/methyltra...    32   4.8  

>UniRef50_A3ZQL2 Cluster: Putative uncharacterized protein; n=1;
           Blastopirellula marina DSM 3645|Rep: Putative
           uncharacterized protein - Blastopirellula marina DSM
           3645
          Length = 180

 Score = 33.1 bits (72), Expect = 2.8
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 163 YTPGLVPPVISPYASPAAVPIT---YSALPSATYY 258
           Y P   PP+ + Y SPA   +T   YS  P+ TYY
Sbjct: 78  YAPAYAPPITTNYYSPAPSVVTTNYYSPAPTTTYY 112


>UniRef50_A7SM04 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 916

 Score = 33.1 bits (72), Expect = 2.8
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 72  SVGRVSGR-SKP*GSPRTSTATSSIHRPGLRLYTRLSTSCDISIRFSGC--CPHH 227
           S G  SG  ++P  +PR+S+++   H PG  L T L TS   S R  G    PH+
Sbjct: 34  SAGIASGSLTRPFSNPRSSSSSRLAHTPGTNLKTPLVTSTSTSHRTPGSSRTPHY 88


>UniRef50_A6GI22 Cluster: Uroporphyrinogen III
           synthase/methyltransferase; n=1; Plesiocystis pacifica
           SIR-1|Rep: Uroporphyrinogen III
           synthase/methyltransferase - Plesiocystis pacifica SIR-1
          Length = 512

 Score = 32.3 bits (70), Expect = 4.8
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +1

Query: 130 QLLPYTGLDYVYTPGLVPPVISPYASPAAVPITY-SALPSATY 255
           ++L   G+DY + PG+  P+ +P A  A +PIT+ S  PS ++
Sbjct: 96  KVLRAAGVDYEFVPGVSSPIAAPEA--AGIPITHRSHTPSVSF 136


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 327,569,540
Number of Sequences: 1657284
Number of extensions: 5484628
Number of successful extensions: 17677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17654
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22761518346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)