Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_P06
         (443 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.061
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.75 
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)                 29   1.3  
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)                 28   3.0  
SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42)                     27   5.3  
SB_45420| Best HMM Match : TSP_1 (HMM E-Value=0.0024)                  27   9.2  

>SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 33.9 bits (74), Expect = 0.061
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 139 PYTGLDYVYTPGLVPPVIS-PYASPAAVPITYSALPSAT 252
           PY    YV  P + PP +S PY SP  V + Y  LP  T
Sbjct: 331 PYVSPPYVSPPYVSPPYVSPPYVSPPYVTLPYVTLPYLT 369



 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 136 LPYTGLDYVYTPGLVPPVIS-PYASPAAVPITYSALP 243
           LPY    +V  P + PP ++ PY SP+ V   Y A P
Sbjct: 225 LPYITPTFVAPPYVTPPYVTPPYVSPSYVAPPYVAPP 261



 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 139 PYTGLDYVYTPGLVPPVISP-YASPAAVPITYSALPSAT 252
           PY    YV  P + PP ++P + +P  V  T+ A P  T
Sbjct: 246 PYVSPSYVAPPYVAPPYVAPTFVAPPYVAPTFVAPPYVT 284



 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 136 LPYTGLDYVYTPGLVPPVIS-PYASP 210
           LPY  L YV TP + PP ++ PY +P
Sbjct: 365 LPYLTLLYVATPYVTPPYVAPPYVAP 390



 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 139 PYTGLDYVYTPGLVPPVISP-YASPAAVPITYSALP 243
           PY    +V  P + PP ++P Y +P  V  +Y A P
Sbjct: 271 PYVAPTFVAPPYVTPPYVAPSYVAPTYVAPSYVAPP 306



 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 139 PYTGLDYVYTPGLVPPVIS-PYASPAAVPITYSALPSAT 252
           PY    YV  P + PP +S PY SP  V   Y + P  T
Sbjct: 321 PYVVQLYVAPPYVSPPYVSPPYVSPPYVSPPYVSPPYVT 359


>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 136 LPYTGLDYVYTPGLVPPVISPYASPAAVPI 225
           +P  G+     PG+VPPV++P  +P A P+
Sbjct: 126 VPVMGVIPQAMPGMVPPVMAPAGAPIAAPM 155


>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
          Length = 521

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +3

Query: 81  RVSGRSKP*GSPRTSTATSSIHRPGLRLYTRLSTSCDISIRFS 209
           + S ++ P  SPRTS  TSS   P   L T L+TS + S + S
Sbjct: 363 KTSPKTSPEISPRTSPKTSSKTSPKTSLKTSLNTSLNTSQKTS 405


>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
          Length = 360

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 81  RVSGRSKP*GSPRTSTATSSIHRPGLRLYTRLSTSCDISIRFS 209
           + S +S P  SP+TS  TSS   P   L T   TS   S++ S
Sbjct: 155 KTSSKSSPKTSPKTSLKTSSKTSPKTSLNTSRKTSRKTSLKRS 197


>SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42)
          Length = 1088

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 150 PGLRLYTRLSTSCDISIRFSGCCPHH 227
           P  R    LS  CD+++RF G C  H
Sbjct: 566 PAYRHTCCLSRGCDLAVRFVGKCARH 591


>SB_45420| Best HMM Match : TSP_1 (HMM E-Value=0.0024)
          Length = 426

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 132 LRCWFWGCLRAWSG 91
           +RCWFWG L  + G
Sbjct: 1   MRCWFWGILLVFIG 14


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,214,261
Number of Sequences: 59808
Number of extensions: 176686
Number of successful extensions: 559
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)