Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_P04
         (439 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   2.9  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   5.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   6.8  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -1

Query: 295 RFSSATALFTKNIKNKYCNIVLYLKNNINKIFNVA*RA 182
           RF+   ++  K  KNKY  +++  K +  +I ++  R+
Sbjct: 482 RFALINSILRKLYKNKYRKLIVDGKKSEEQIVDICIRS 519


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 67  VAFVKXFYYXPFKWSLVKSVGFFTVGVV 150
           +AFV    Y  F W+ +    FF +  V
Sbjct: 405 LAFVTIVTYETFVWTQIMGAEFFKLYAV 432


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 247 YCNIVLYLKNNINKI 203
           +C I++YL + IN I
Sbjct: 335 FCRIMVYLNSAINPI 349


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,624
Number of Sequences: 336
Number of extensions: 1560
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)