Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_P04
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   2.2  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.1  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    24   8.9  
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos...    24   8.9  

>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 273 NAVAELKRPNFVLILTDD 326
           N  AE K+PNF++I+ DD
Sbjct: 4   NKQAESKKPNFLVIVADD 21


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 274 LFTKNIKNKYCNIVLYLKNNINK 206
           +F + ++NKY  I  Y  N +NK
Sbjct: 305 VFLQELQNKYSEIKTYSSNKLNK 327


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +1

Query: 52  AKKGVVAFVKXFYYXPFKWSLVKSVGFFTVGVVIASECTG 171
           A  G+V  +  + +   KWS +        G+V A+ C G
Sbjct: 280 AVAGLVWVIYDYIFRTRKWSTIGFCSGVVAGLVAATPCAG 319


>SPAC1952.07 |rad1||checkpoint clamp complex protein
           Rad1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 46  IMAKKGVVAFVKXFYYX-PFKWSLVKSVGFFTVGVVIASEC 165
           IM K+GV+  V+      PF W + +  G+ T   ++  EC
Sbjct: 104 IMHKRGVICKVQYNGPGCPFIWEVEEMAGYATACELLTMEC 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,485,535
Number of Sequences: 5004
Number of extensions: 24835
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)