Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_P04
(439 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12173-1|CAA78164.1| 552|Homo sapiens N-acetylglucosamine-6-sul... 39 0.007
BC012482-1|AAH12482.1| 552|Homo sapiens glucosamine (N-acetyl)-... 39 0.007
AK223484-1|BAD97204.1| 552|Homo sapiens glucosamine (N-acetyl)-... 39 0.007
BC110539-1|AAI10540.1| 870|Homo sapiens sulfatase 2 protein. 35 0.11
AY358461-1|AAQ88826.1| 867|Homo sapiens GPPS559 protein. 35 0.11
AY101176-1|AAM76861.1| 870|Homo sapiens extracellular sulfatase... 35 0.11
AL354813-2|CAI17943.1| 870|Homo sapiens RP5-1049G16.1 protein. 35 0.11
AL354813-1|CAI17942.1| 189|Homo sapiens ULF2) (sulfatase 2, H-S... 35 0.11
AL034418-7|CAI42143.1| 870|Homo sapiens RP5-1049G16.1 protein. 35 0.11
AB033073-1|BAA86561.2| 885|Homo sapiens KIAA1247 protein protein. 35 0.11
AY101175-1|AAM76860.1| 871|Homo sapiens extracellular sulfatase... 34 0.25
AF545571-1|AAO33315.1| 871|Homo sapiens sulfatase SULF1 precurs... 31 1.7
>Z12173-1|CAA78164.1| 552|Homo sapiens
N-acetylglucosamine-6-sulphatase protein.
Length = 552
Score = 39.1 bits (87), Expect = 0.007
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +3
Query: 267 VNNAVAELKRPNFVLILTDDQDVVLGGMVSI 359
V A +RPN VL+LTDDQD VLGGM +
Sbjct: 37 VFGVAAGTRRPNVVLLLTDDQDEVLGGMTPL 67
>BC012482-1|AAH12482.1| 552|Homo sapiens glucosamine
(N-acetyl)-6-sulfatase (Sanfilippo disease IIID)
protein.
Length = 552
Score = 39.1 bits (87), Expect = 0.007
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +3
Query: 267 VNNAVAELKRPNFVLILTDDQDVVLGGMVSI 359
V A +RPN VL+LTDDQD VLGGM +
Sbjct: 37 VFGVAAGTRRPNVVLLLTDDQDEVLGGMTPL 67
>AK223484-1|BAD97204.1| 552|Homo sapiens glucosamine
(N-acetyl)-6-sulfatase precursor variant protein.
Length = 552
Score = 39.1 bits (87), Expect = 0.007
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +3
Query: 267 VNNAVAELKRPNFVLILTDDQDVVLGGMVSI 359
V A +RPN VL+LTDDQD VLGGM +
Sbjct: 37 VFGVAAGTRRPNVVLLLTDDQDEVLGGMTPL 67
>BC110539-1|AAI10540.1| 870|Homo sapiens sulfatase 2 protein.
Length = 870
Score = 35.1 bits (77), Expect = 0.11
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3
Query: 294 RPNFVLILTDDQDVVLGGM 350
RPN +L+LTDDQDV LG M
Sbjct: 43 RPNIILVLTDDQDVELGSM 61
>AY358461-1|AAQ88826.1| 867|Homo sapiens GPPS559 protein.
Length = 867
Score = 35.1 bits (77), Expect = 0.11
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3
Query: 294 RPNFVLILTDDQDVVLGGM 350
RPN +L+LTDDQDV LG M
Sbjct: 43 RPNIILVLTDDQDVELGSM 61
>AY101176-1|AAM76861.1| 870|Homo sapiens extracellular sulfatase
SULF-2 protein.
Length = 870
Score = 35.1 bits (77), Expect = 0.11
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3
Query: 294 RPNFVLILTDDQDVVLGGM 350
RPN +L+LTDDQDV LG M
Sbjct: 43 RPNIILVLTDDQDVELGSM 61
>AL354813-2|CAI17943.1| 870|Homo sapiens RP5-1049G16.1 protein.
Length = 870
Score = 35.1 bits (77), Expect = 0.11
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3
Query: 294 RPNFVLILTDDQDVVLGGM 350
RPN +L+LTDDQDV LG M
Sbjct: 43 RPNIILVLTDDQDVELGSM 61
>AL354813-1|CAI17942.1| 189|Homo sapiens ULF2) (sulfatase 2,
H-SULF2, KIAA1247). protein.
Length = 189
Score = 35.1 bits (77), Expect = 0.11
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3
Query: 294 RPNFVLILTDDQDVVLGGM 350
RPN +L+LTDDQDV LG M
Sbjct: 43 RPNIILVLTDDQDVELGSM 61
>AL034418-7|CAI42143.1| 870|Homo sapiens RP5-1049G16.1 protein.
Length = 870
Score = 35.1 bits (77), Expect = 0.11
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3
Query: 294 RPNFVLILTDDQDVVLGGM 350
RPN +L+LTDDQDV LG M
Sbjct: 43 RPNIILVLTDDQDVELGSM 61
>AB033073-1|BAA86561.2| 885|Homo sapiens KIAA1247 protein protein.
Length = 885
Score = 35.1 bits (77), Expect = 0.11
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3
Query: 294 RPNFVLILTDDQDVVLGGM 350
RPN +L+LTDDQDV LG M
Sbjct: 58 RPNIILVLTDDQDVELGSM 76
>AY101175-1|AAM76860.1| 871|Homo sapiens extracellular sulfatase
SULF-1 protein.
Length = 871
Score = 33.9 bits (74), Expect = 0.25
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 294 RPNFVLILTDDQDVVLGGM 350
RPN +L+LTDDQDV LG +
Sbjct: 42 RPNIILVLTDDQDVELGSL 60
>AF545571-1|AAO33315.1| 871|Homo sapiens sulfatase SULF1 precursor
protein.
Length = 871
Score = 31.1 bits (67), Expect = 1.7
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 294 RPNFVLILTDDQDVVLGGM 350
RPN +L+ TDDQDV LG +
Sbjct: 42 RPNIILVPTDDQDVELGSL 60
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,968,818
Number of Sequences: 237096
Number of extensions: 804950
Number of successful extensions: 926
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -