Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_P02
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   5.0  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    25   5.0  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.6  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    24   8.7  

>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 205 KSSPDEAFVCRDCKRFDSMTKIEYNLGSYSNV 110
           K+ PD+A+ C +CK      +++      SNV
Sbjct: 297 KNLPDDAWYCNECKHHSLYNELDEQEELESNV 328


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 373 NHSSFITENLFQTYKNLTAHNKYVK 299
           N SSF+ E  F+ +KN T H  +V+
Sbjct: 521 NESSFV-EGTFKAFKNRTIHTYHVE 544


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 192 TKPSFAETVSALIR*PKLNI 133
           TKPSF ETV A    P+L I
Sbjct: 165 TKPSFGETVQAPPELPELKI 184


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 157 QSAYSLGKRRLRQGCSST 210
           + AY  GKR +R GC+ T
Sbjct: 151 EKAYEKGKRLIRAGCAFT 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,571,479
Number of Sequences: 5004
Number of extensions: 28168
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)