Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_P02
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41278-2|AAK31509.1|  403|Caenorhabditis elegans Hypothetical pr...    32   0.15 
Z70267-3|CAA94214.1|  534|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical ...    27   5.8  
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    27   7.7  
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    27   7.7  

>U41278-2|AAK31509.1|  403|Caenorhabditis elegans Hypothetical
           protein F33G12.3 protein.
          Length = 403

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 26/95 (27%), Positives = 43/95 (45%)
 Frame = +2

Query: 2   PMEKKRTVLLKEMITVYPDDFGGEDDYPRQNLKVRGHVRVRSKIIFNFGHRIKALTVSAN 181
           P EKKR   L + I    D    E     +   ++G   + +K +F+     K  TV+AN
Sbjct: 310 PTEKKRFEELSKTIERVQDQPSDEIGRVVKLRNIKGITSI-TKRVFSCAEVTKTTTVTAN 368

Query: 182 EGFVRAALQQGVTYAAFVHESRALTEGKEDSARRI 286
           + F+  +  + + +       R LTE KE +A+ I
Sbjct: 369 QKFLTHSRAKHIYFDVIEIPPRPLTEQKEATAKVI 403


>Z70267-3|CAA94214.1|  534|Caenorhabditis elegans Hypothetical
           protein K04C1.2b protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 140 NFGHRIKALTVSANEGFVRAALQQGVTYAAFVHESRALTEGKEDSARRIT 289
           NFG  I A  VS   G   ++ Q   + A  VH +  + +G  D + R T
Sbjct: 29  NFGKPIFATFVSKGTGNPGSSDQPSTSSAGNVHRNSTINQGANDGSERNT 78


>AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical
           protein Y4C6A.3 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 390 MIFNFLITVHLSQKICFKHTKI*LHIINTLKYHKVILLAESSFPSVR 250
           +I  FL   H+   +C     I LHI+  L Y   I   ESS+P ++
Sbjct: 108 LILMFLPITHIGVPVCIY---IALHIVFALYYFLFIWNVESSYPRMK 151


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 8   EKKRTVLLKEMITVYPDDFGGEDDYPRQNLKVRGHV 115
           +K     LKE I+   DD     DY  QNL V+ H+
Sbjct: 268 DKGNEASLKEEISRIRDDIRKAKDYLEQNLHVKQHM 303


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 8   EKKRTVLLKEMITVYPDDFGGEDDYPRQNLKVRGHV 115
           +K     LKE I+   DD     DY  QNL V+ H+
Sbjct: 268 DKGNEASLKEEISRIRDDIRKAKDYLEQNLHVKQHM 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,551,949
Number of Sequences: 27780
Number of extensions: 156113
Number of successful extensions: 554
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)