Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_P01
         (755 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    24   1.5  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   6.1  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   6.1  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 633 LVFDEAVSSINVTLFFNQFNG 571
           + FD+A+++ N+ L+   FNG
Sbjct: 197 ITFDDAINNNNIELYKEIFNG 217



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 671 FKECFKGRILSHN*CSTKQFLPLMSRYSSTSLME--YSKGTMIR*HT 537
           +KE F G+  + N C  K    +  +Y++ S ++  + KG  I  H+
Sbjct: 211 YKEIFNGKRKNPNGCDIKATFFVSHKYTNYSAVQEMHRKGHEIAVHS 257


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -1

Query: 473 FTLTTTQIKVVYGFKFSTLVLLEIVEVSK 387
           FT+    + +V G  +++L +  +VE+S+
Sbjct: 183 FTILNNYLTIVLGETWTSLSVYHLVEISE 211


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -1

Query: 473 FTLTTTQIKVVYGFKFSTLVLLEIVEVSK 387
           FT+    + +V G  +++L +  +VE+S+
Sbjct: 179 FTILNNYLTIVLGETWTSLSVYHLVEISE 207


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,625
Number of Sequences: 336
Number of extensions: 3530
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)