Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_P01
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   2.2  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    27   3.8  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    27   3.8  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    25   8.8  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    25   8.8  

>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 491 NHFTYNFTLTTTQIKVVYGFKFSTLVLLEIVEVSKRFL 378
           +H  YN T T  ++  ++GF++S L   EI +   RFL
Sbjct: 5   DHHFYNVTYTAYRLSPLFGFEYSNLT--EIGKKLTRFL 40


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/52 (40%), Positives = 27/52 (51%)
 Frame = +2

Query: 257 YLKEELLRTLFTHKKRLKFFS*TFYPFHELFTKFVVAFSSLRTF*KPLLFLV 412
           +LKE  L TL   KK LKF   T  P H   + +VV +   R F K L +L+
Sbjct: 315 FLKEASLNTLIKDKKMLKFII-TVRPVHLHVSPWVV-YRRYRGF-KTLYYLL 363


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 503 KTVSVPLNLNQQCASGSLYPSNIPLNWLKNNVTLM 607
           ++ S  L   Q   S +LY SN+PL+W +++++ +
Sbjct: 369 ESFSARLQSLQDTESTNLYISNLPLHWNESDISTL 403


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +2

Query: 137 TLV*LKLDFENFYRLSIISVLIIHCSERFQTSLVFFYSN----MYLKEELLRTL 286
           TL+  K     +  L  I +++  C E F   + FFY N    +Y+K E L  L
Sbjct: 289 TLLARKSSATQYVILRNIQIILEQCPEMFANDIHFFYCNFDDPIYVKLEKLDIL 342


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 230 SLVFFYSNMYLKEELLRTLFTHKKRLKFFS*TFYPF 337
           SL  FYS+ Y  E+L+  L   +K   FF+  + PF
Sbjct: 183 SLKNFYSSNYFAEKLIDQLKNREKSQSFFA--YLPF 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,066
Number of Sequences: 5004
Number of extensions: 63129
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)