Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_P01
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280           28   9.2  
06_03_0606 - 22689935-22689998,22690716-22691159,22691669-226920...    28   9.2  
06_03_0521 + 21724447-21724594,21724795-21725342                       28   9.2  

>09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280
          Length = 422

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 26  RLPTPMDYDRPNELTYFSITSIIHFNSPDRTY 121
           R  TP D D  N + +FS++ ++ FN P R +
Sbjct: 202 RTLTPKDGDAKN-INHFSLSMLLRFNPPSRPF 232


>06_03_0606 -
           22689935-22689998,22690716-22691159,22691669-22692057,
           22692130-22692223,22692507-22692599,22692705-22692913,
           22692999-22693833,22693948-22694038,22698069-22698892,
           22699384-22700489,22701353-22701415
          Length = 1403

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 515 VPLNLNQQCASGSLYPSNIPLNWLKNNVTLMEETA 619
           +PLN+ +Q   G    + IPL+WL  N + +++ A
Sbjct: 794 IPLNI-EQGQGGKKKQNGIPLSWLSQNFSHLDDDA 827


>06_03_0521 + 21724447-21724594,21724795-21725342
          Length = 231

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 55  SIVVHWGWKARARAR 11
           S+V+H GW+ RARAR
Sbjct: 190 SVVMHRGWRVRARAR 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,231,525
Number of Sequences: 37544
Number of extensions: 316835
Number of successful extensions: 564
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)