Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_P01
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z49073-5|CAA88890.1| 1122|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AC024214-15|AAM97983.1|  544|Caenorhabditis elegans Hypothetical...    28   8.2  
AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical...    28   8.2  

>Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical
           protein T03F6.1 protein.
          Length = 236

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 497 GVKTVSVPLNLNQQCASGSLYPSNIPLNWLKNNVTLMEETASS 625
           G   +++ L+ N Q  S  L   N   NW +   +++E+TASS
Sbjct: 27  GYTVLNIDLSANDQADSNILVDGN--KNWTEQEQSILEQTASS 67


>Z49073-5|CAA88890.1| 1122|Caenorhabditis elegans Hypothetical
           protein ZK970.6 protein.
          Length = 1122

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 621 EAVSSINVTLFFNQFNGIFEGYNDPLAHCWLRFKGTDTVLTPL 493
           E V+ +N+T F+N  + +  GY+D     W  + GT  + TP+
Sbjct: 428 EQVALVNMT-FYNSSSQLSRGYSDEGRSVWHFWDGTRPLDTPI 469


>AC024214-15|AAM97983.1|  544|Caenorhabditis elegans Hypothetical
           protein Y77E11A.12a protein.
          Length = 544

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 23  TRLPTPMDYDRPNELTYFSITSIIHFNSPD 112
           +R PTP  YD  + L   S  S IH +SPD
Sbjct: 354 SRTPTPSQYDSNSHLDAHS-ESAIHLDSPD 382


>AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical
           protein Y77E11A.12b protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 23  TRLPTPMDYDRPNELTYFSITSIIHFNSPD 112
           +R PTP  YD  + L   S  S IH +SPD
Sbjct: 454 SRTPTPSQYDSNSHLDAHS-ESAIHLDSPD 482


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,178,777
Number of Sequences: 27780
Number of extensions: 328574
Number of successful extensions: 690
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)